Browse Element(s) Details


OsAffx.22564.1.S1_at

Description tigr:9635.m03593
TID=OsAffx.22564.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3634011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36290OsAffx.28776.3.S1_x_at11/117+21699926..21703973F-box domain containing protein
LOC_Os07g36290OsAffx.28776.3.S1_at10/117+21699926..21703973F-box domain containing protein
LOC_Os07g36300OsAffx.28777.1.S1_x_at11/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300OsAffx.28777.2.S1_at9/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300OsAffx.8626.1.S1_at2/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300Os.29958.2.S1_x_at1/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300Os.5606.1.S1_at1/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36310OsAffx.28778.1.S1_x_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36310OsAffx.28778.2.S1_s_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36310OsAffx.28778.1.S1_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36320NANA7+21719985..21720977F-box domain containing protein
LOC_Os07g36330OsAffx.16582.1.S1_at11/117+21721517..21724704F-box domain containing protein
LOC_Os07g36340OsAffx.22564.1.S1_at11/117+21726595..21730379F-box domain containing protein
LOC_Os07g36360Os.10631.1.S1_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40855.5.S1_x_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_at9/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_x_at6/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36370OsAffx.22564.2.S1_at10/117+21745224..21749411F-box domain containing protein
LOC_Os07g36370OsAffx.10327.1.S1_x_at3/117+21745224..21749411F-box domain containing protein
LOC_Os07g36390Os.44710.1.S1_at11/117+21752159..21755527CRP1, putative, expressed
LOC_Os07g36390Os.8081.1.A1_at10/117+21752159..21755527CRP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22564.1.S1_at--314--6531Chr07:21727831..21727855 (25 bp)
GATTTGCATCTGTGATTGGCTACCA
LOC_Os07g36340
OsAffx.22564.1.S1_at--568--5491Chr07:21727792..21727816 (25 bp)
GAACATTTTGTTGGAGTGTCTCGAA
LOC_Os07g36340
OsAffx.22564.1.S1_at--13--5331Chr07:21727767..21727791 (25 bp)
GAAGTAACGATCCTCTACTACAGAG
LOC_Os07g36340
OsAffx.22564.1.S1_at--360--971Chr07:21727686..21727710 (25 bp)
AGGAGGATAAGAATAGCCCGCTACT
LOC_Os07g36340
OsAffx.22564.1.S1_at--613--4851Chr07:21727667..21727691 (25 bp)
GCTACTGTTCGGTTGCTGATTGGGA
LOC_Os07g36340
OsAffx.22564.1.S1_at--363--9092Chr07:21727634..21727658 (25 bp)
TGCTACGTGCTGATCTACGTGCGTA
LOC_Os07g36340
OsAffx.22564.1.S1_at--164--5911Chr07:21727269..21727292 (24 bp)
GAGCTCACTTTAGTTTTCACTGGCA
LOC_Os07g36340
OsAffx.22564.1.S1_at--294--3411Chr07:21727241..21727265 (25 bp)
CAGCAGGGATGCTCTGTGTGTACAT
LOC_Os07g36340
OsAffx.22564.1.S1_at--9--4951Chr07:21727215..21727239 (25 bp)
GCATTTCTGATTTGCTACGGCGTTC
LOC_Os07g36340
OsAffx.22564.1.S1_at--168--7631Chr07:21726739..21726763 (25 bp)
GGGAAAATCCGTCGCCTTGACCAGC
LOC_Os07g36340
OsAffx.22564.1.S1_at--638--3951Chr07:21726703..21726727 (25 bp)
CGGATTCGGCACGTTTCGTGGCAAT
LOC_Os07g36340
Target Sequence 
GATTTGCATCTGTGATTGGCTACCAAACTGGAGAAACGAGAACATTTTGTTGGAGTGTCTCGAAGAAGTAACGATCCTCT
ACTACAGAGGGGAGGACGATGAGCTTGACCTTCTGAAGCTCTTAGTCAGGGGAGCAACAGGCCTTAGGAGGATAAGAATA
GCCCGCTACTGTTCGGTTGCTGATTGGGAGATAGAGATGCTACGTGCTGATCTACGTGCGTATGCAGAAGAGCTCACTTT
AGTTTTCACTGGCAATCCAGCAGGGATGCTCTGTGTGTACATAGCATTTCTGATTTGCTACGGCGTTCTGCAGTTGCATN
NNCCGCCACTATCTTGGCAGCGCGCCCGTCTTGCGGCGCCGCGGGTGACCAGGGACGACGGCTTCCGCCTCCGATACGCC
GCGGGAAAATCCGTCGCCTTGACCAGCTTCTTCTGCCTCGGATTCGGCACGTTTCGTGGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis