Browse Element(s) Details


Os.44710.1.S1_at

Description gb:NM_185739.1
DB_XREF= gi:34898563
GEN=P0534A03.8
TID=Os.44710.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44710 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative crp1 protein (P0534A03.8), mRNA.
PROD=putative crp1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3639011/11CRP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36340OsAffx.22564.1.S1_at11/117+21726595..21730379F-box domain containing protein
LOC_Os07g36360Os.10631.1.S1_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40855.5.S1_x_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_at9/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_x_at6/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36370OsAffx.22564.2.S1_at10/117+21745224..21749411F-box domain containing protein
LOC_Os07g36370OsAffx.10327.1.S1_x_at3/117+21745224..21749411F-box domain containing protein
LOC_Os07g36390Os.44710.1.S1_at11/117+21752159..21755527CRP1, putative, expressed
LOC_Os07g36390Os.8081.1.A1_at10/117+21752159..21755527CRP1, putative, expressed
LOC_Os07g36400Os.29958.1.S1_at11/117+21758911..21762320expressed protein
LOC_Os07g36400Os.29958.2.S1_x_at10/117+21758911..21762320expressed protein
LOC_Os07g36400Os.22353.3.S1_x_at1/117+21758911..21762320expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44710.1.S1_at--429--10091Chr07:21753552..21753576 (25 bp)
TAGGCACAACCACATATAACATCAT
LOC_Os07g36390
Os.44710.1.S1_at--155--2511Chr07:21753569..21753593 (25 bp)
AACATCATGATCAACTTGCTTGGTG
LOC_Os07g36390
Os.44710.1.S1_at--432--6891Chr07:21753689..21753713 (25 bp)
GTATATGGTCGGTCTGGCAGGTTCA
LOC_Os07g36390
Os.44710.1.S1_at--502--8971Chr07:21753756..21753780 (25 bp)
TGAAACCATCACCTACCATGTACCA
LOC_Os07g36390
Os.44710.1.S1_at--372--4451Chr07:21753782..21753806 (25 bp)
GCCTTAGTCAATGCATACGCTCAAA
LOC_Os07g36390
Os.44710.1.S1_at--888--7651Chr07:21754166..21754190 (25 bp)
GGGTTTAGCAGACCACGCGTTAAAT
LOC_Os07g36390
Os.44710.1.S1_at--772--3351Chr07:21754179..21754203 (25 bp)
CACGCGTTAAATGTTGTCAAGGCCA
LOC_Os07g36390
Os.44710.1.S1_at--922--4451Chr07:21754216..21754240 (25 bp)
GCCTAGAGGCTAGCACAGTAGTTCT
LOC_Os07g36390
Os.44710.1.S1_at--585--2551Chr07:21754242..21754266 (25 bp)
AACTCCTTGATCAATGCTTTTGGTG
LOC_Os07g36390
Os.44710.1.S1_at--832--2651Chr07:21754285..21754309 (25 bp)
AAGCCTTCTCTGTGTTGCAATTCAT
LOC_Os07g36390
Os.44710.1.S1_at--565--2991Chr07:21754483..21754507 (25 bp)
AATGAAAGCTTTAATCCGTGTTGAG
LOC_Os07g36390
Target Sequence 
TAGGCACAACCACATATAACATCATGATCAACTTGCTTGGTGAAGAGCAACGATGGGAGGGGGTAGAAGCAATGCTAGCA
GAGATGAAGGAACAGGGATTGGTGCCAAACATTATCACATACACTACACTTGTGGATGTATATGGTCGGTCTGGCAGGTT
CAAGGAGGCAGTTGATTGCATTGAGGCAATGAAAGCGGATGGCCTGAAACCATCACCTACCATGTACCATGCCTTAGTCA
ATGCATACGCTCAAAGGGGTTTAGCAGACCACGCGTTAAATGTTGTCAAGGCCATGAGAGCAGATGGCCTAGAGGCTAGC
ACAGTAGTTCTAAACTCCTTGATCAATGCTTTTGGTGAGGATAGAAGGATTGCTGAAGCCTTCTCTGTGTTGCAATTCAT
GAAGGAAAATGGTTTAAGGCCTGATGTTATAACATATACTACACTAATGAAAGCTTTAATCCGTGTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis