Browse Element(s) Details


Os.10631.1.S1_at

Description gb:AU078115
DB_XREF= gi:5816518
DB_XREF=AU078115
CLONE=E1050_6Z
TID=Os.10631.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10631 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1612_A04.35 (OJ1612_A04.35), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3636011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36310OsAffx.28778.1.S1_x_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36310OsAffx.28778.2.S1_s_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36310OsAffx.28778.1.S1_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36320NANA7+21719985..21720977F-box domain containing protein
LOC_Os07g36330OsAffx.16582.1.S1_at11/117+21721517..21724704F-box domain containing protein
LOC_Os07g36340OsAffx.22564.1.S1_at11/117+21726595..21730379F-box domain containing protein
LOC_Os07g36360Os.10631.1.S1_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40855.5.S1_x_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_at9/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_x_at6/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36370OsAffx.22564.2.S1_at10/117+21745224..21749411F-box domain containing protein
LOC_Os07g36370OsAffx.10327.1.S1_x_at3/117+21745224..21749411F-box domain containing protein
LOC_Os07g36390Os.44710.1.S1_at11/117+21752159..21755527CRP1, putative, expressed
LOC_Os07g36390Os.8081.1.A1_at10/117+21752159..21755527CRP1, putative, expressed
LOC_Os07g36400Os.29958.1.S1_at11/117+21758911..21762320expressed protein
LOC_Os07g36400Os.29958.2.S1_x_at10/117+21758911..21762320expressed protein
LOC_Os07g36400Os.22353.3.S1_x_at1/117+21758911..21762320expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10631.1.S1_at--769--7411Chr07:21740734..21740758 (25 bp)
GTGTTGTCTGTAACGGAATGCTTCC
LOC_Os07g36360
Os.10631.1.S1_at--928--2491Chr07:21740723..21740747 (25 bp)
AACGGAATGCTTCCTCGAGGATCTG
LOC_Os07g36360
Os.10631.1.S1_at--825--631Chr07:21740717..21740741 (25 bp)
ATGCTTCCTCGAGGATCTGGAGGGT
LOC_Os07g36360
Os.10631.1.S1_at--357--4671Chr07:21740660..21740684 (25 bp)
GCGGTGGCTAGATATGTAACAGCCT
LOC_Os07g36360
Os.10631.1.S1_at--1085--251Chr07:21740649..21740673 (25 bp)
ATATGTAACAGCCTGGATTGGTCTA
LOC_Os07g36360
Os.10631.1.S1_at--712--6351Chr07:21740615..21740639 (25 bp)
GATGCCGCGCCTGCAGATGTTGTTG
LOC_Os07g36360
Os.10631.1.S1_at--524--831Chr07:21740571..21740595 (25 bp)
ATGGATTGCAGAACGTTTTCTTCAA
LOC_Os07g36360
Os.10631.1.S1_at--1098--5431Chr07:21740561..21740585 (25 bp)
GAACGTTTTCTTCAATCGGAGCTGT
LOC_Os07g36360
Os.10631.1.S1_at--574--9731Chr07:21740526..21740550 (25 bp)
TCAATCTCTGTCCAAGCATTGACGG
LOC_Os07g36360
Os.10631.1.S1_at--305--2711Chr07:21740513..21740537 (25 bp)
AAGCATTGACGGTCTCCTGCTGTTC
LOC_Os07g36360
Os.10631.1.S1_at--476--7171Chr07:21740502..21740526 (25 bp)
GTCTCCTGCTGTTCGTTGAAATTTG
LOC_Os07g36360
Target Sequence 
GTGTTGTCTGTAACGGAATGCTTCCTCGAGGATCTGGAGGGTGTGAGCATTGTGGCAGAGGAGCTGGAGGACNTGCGGTG
GCTAGATATGTAACAGCCTGGATTGGTCTACTTCAAGAGGATGCCGCGCCTGCAGATGTTGTTGCCCCCCGCTGTTTATC
CTTATGGATTGCAGAACGTTTTCTTCAATCGGAGCTGTCAGATGCTTCTCAATCTCTGTCCAAGCATTGACGGTCTCCTG
CTGTTCGTTGAAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis