Browse Element(s) Details


Os.44707.1.S1_at

Description gb:AK120534.1
DB_XREF= gi:37990157
TID=Os.44707.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.44707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0534A03.14 (P0534A03.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128J17, full insert sequence.
FL= gb:AK120534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3641011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36400Os.29958.1.S1_at11/117+21758911..21762320expressed protein
LOC_Os07g36400Os.29958.2.S1_x_at10/117+21758911..21762320expressed protein
LOC_Os07g36400Os.22353.3.S1_x_at1/117+21758911..21762320expressed protein
LOC_Os07g36410Os.44707.1.S1_at11/117+21781555..21784842expressed protein
LOC_Os07g36410Os.44707.2.S1_x_at11/117+21781555..21784842expressed protein
LOC_Os07g36420Os.4895.1.S1_at11/117+21786984..21792146proteasome inhibitor, putative, expressed
LOC_Os07g36430Os.31021.1.S1_at10/117+21796589..21797208expressed protein
LOC_Os07g36439OsAffx.1550.1.S1_at2/117+21798568..21798777NA
LOC_Os07g36450Os.10560.1.S1_at11/117+21801037..21803585pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44707.1.S1_at--232--9551Chr07:21784294..21784318 (25 bp)
TCTAGTCCATGCACCTGTGTGATAT
LOC_Os07g36410
Os.44707.1.S1_at--1102--8751Chr07:21784452..21784476 (25 bp)
TGTATGTGTGTGTGCCAGCTCAGCA
LOC_Os07g36410
Os.44707.1.S1_at--600--8631Chr07:21784487..21784511 (25 bp)
TGGGTACAGCACACAGGCTTGCATT
LOC_Os07g36410
Os.44707.1.S1_at--247--8491Chr07:21784559..21784583 (25 bp)
TGGCTGGTGGTTGAATGCTTCTTCT
LOC_Os07g36410
Os.44707.1.S1_at--38--9911Chr07:21784639..21784663 (25 bp)
TACTCCCTTCAATACCATATGCTAC
LOC_Os07g36410
Os.44707.1.S1_at--420--4851Chr07:21784659..21784683 (25 bp)
GCTACTCCCTTCAATTATTCTTCAA
LOC_Os07g36410
Os.44707.1.S1_at--915--10211Chr07:21784674..21784698 (25 bp)
TATTCTTCAACTAGGCTGGGTCACA
LOC_Os07g36410
Os.44707.1.S1_at--1098--9671Chr07:21784735..21784759 (25 bp)
TCACTATTTGGCCTATATCTCCTTC
LOC_Os07g36410
Os.44707.1.S1_at--529--251Chr07:21784749..21784773 (25 bp)
ATATCTCCTTCCATTCCATGTAGGA
LOC_Os07g36410
Os.44707.1.S1_at--935--6811Chr07:21784780..21784804 (25 bp)
GTTTATGTGGTGTGCAAGTCTCAAT
LOC_Os07g36410
Os.44707.1.S1_at--15--711Chr07:21784803..21784827 (25 bp)
ATGAGTATCTTTCCATCTGTCTTTC
LOC_Os07g36410
Target Sequence 
TCTAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTG
AGAAGCCNATTGGGGCTGNTTTTTTTGAGATTCTTGAGAAGGGAATTTTCTTTGGTATGTACTGTATGTGTTGGTGTATG
TATGTGTGTGTGCCAGCTCAGCAGTGAGTGAGCTGGGTACAGCACACAGGCTTGCATTGCCTTCCCTGCACTGCATGTGA
GCTTGTTTGTGTTTGGCTGGCTGGCTGGCTGGTGGTTGAATGCTTCTTCTCCTGCCTAAGATGATTAGATTAGTAGTACA
TATACAATCATACAATACCATATGCTACTCCCTTCAATACCATATGCTACTCCCTTCAATTATTCTTCAACTAGGCTGGG
TCACAGGCTCATAGTAGAGCTAGCACAGAATATAATAATAATCACTATTTGGCCTATATCTCCTTCCATTCCATGTAGGA
GTATCTGTTTATGTGGTGTGCAAGTCTCAATGAGTATCTTTCCATCTGTCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis