Browse Element(s) Details


OsAffx.1550.1.S1_at

Description gb:NM_185750.1
DB_XREF= gi:34898585
GEN=P0534A03.19
TID=OsAffx.1550.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0534A03.19 (P0534A03.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g364392/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36410Os.44707.1.S1_at11/117+21781555..21784842expressed protein
LOC_Os07g36410Os.44707.2.S1_x_at11/117+21781555..21784842expressed protein
LOC_Os07g36420Os.4895.1.S1_at11/117+21786984..21792146proteasome inhibitor, putative, expressed
LOC_Os07g36430Os.31021.1.S1_at10/117+21796589..21797208expressed protein
LOC_Os07g36439OsAffx.1550.1.S1_at2/117+21798568..21798777NA
LOC_Os07g36450Os.10560.1.S1_at11/117+21801037..21803585pentatricopeptide, putative, expressed
LOC_Os07g36460OsAffx.28779.1.S1_at10/117+21812540..21814354Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g36470NANA7+21814902..21817249Vacuolar ATP synthase subunit H, putative, expressed
LOC_Os07g36480Os.12378.1.S1_at7/117+21817845..21820337vacuolar ATP synthase subunit H 2, putative, expressed
LOC_Os07g36490Os.46046.1.A1_at10/117+21821318..21823558RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1550.1.S1_at--1047--7331Chr07:21799622..21799646 (25 bp)
GTGCACCGTCGAGGGAAGCTTCATC
NONE
OsAffx.1550.1.S1_at--777--7611Chr07:21799481..21799505 (25 bp)
GGGAAACTCCTTAGATTCTTGCTTG
NONE
OsAffx.1550.1.S1_at--29--5511Chr07:21799041..21799467 (25 bp)
GAACAGCTGGATTGCCAAAGCATCT
NONE
OsAffx.1550.1.S1_at--327--2711NONE
AAGCATCTATGTCATTTTGGTTCAA
NONE
OsAffx.1550.1.S1_at--3--9751Chr07:21798969..21798993 (25 bp)
TAATCAACTGAATGTGGTCACTTTC
NONE
OsAffx.1550.1.S1_at--189--8591Chr07:21798955..21798979 (25 bp)
TGGTCACTTTCAACATGCAACACAA
NONE
OsAffx.1550.1.S1_at--704--5451Chr07:21798796..21798820 (25 bp)
GAACGGCATCTTTCTGAAACCAAAT
NONE
OsAffx.1550.1.S1_at--111--6211Chr07:21798771..21798795 (25 bp)
GAGGCAGCGAATTCAGCAATGGTGT
NONE
OsAffx.1550.1.S1_at--250--3211Chr07:21798755..21798779 (25 bp)
CAATGGTGTACCAGAGCAGCTCATC
NONE
OsAffx.1550.1.S1_at--524--6711Chr07:21798708..21798732 (25 bp)
GTTCGCTTTCTGCATGACACGGACA
LOC_Os07g36439
OsAffx.1550.1.S1_at--443--5631Chr07:21798612..21798711 (25 bp)
GACACGTGGCACGAAGCTGCAATTA
LOC_Os07g36439
Target Sequence 
GTGCACCGTCGAGGGAAGCTTCATCTTGTCTCCAATGATTCTTGTCATGGAGGGGGGAAACTCCTTAGATTCTTGCTTGA
ATCTAAGAAATGGAACAGCTGGATTGCCAAAGCATCTATGTCATTTTGGTTCAATACAACTATACAAGACTTAGAAAGCA
GAAATAATCAACTGAATGTGGTCACTTTCAACATGCAACACAAGGAGGAAATAAGGGAAGCAGATTGGCAGAACGGCATC
TTTCTGAAACCAAATGAGGCAGCGAATTCAGCAATGGTGTACCAGAGCAGCTCATCTCCTGCTATCTCTGCCTCCGCTGT
TCGCTTTCTGCATGACACGGACACGTGGCACGAAGCTGCAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis