Browse Element(s) Details


Os.44707.2.S1_x_at

Description gb:NM_185745.1
DB_XREF= gi:34898575
GEN=P0534A03.14
TID=Os.44707.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0534A03.14 (P0534A03.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0534A03.14 (P0534A03.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3641011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36400Os.29958.1.S1_at11/117+21758911..21762320expressed protein
LOC_Os07g36400Os.29958.2.S1_x_at10/117+21758911..21762320expressed protein
LOC_Os07g36400Os.22353.3.S1_x_at1/117+21758911..21762320expressed protein
LOC_Os07g36410Os.44707.1.S1_at11/117+21781555..21784842expressed protein
LOC_Os07g36410Os.44707.2.S1_x_at11/117+21781555..21784842expressed protein
LOC_Os07g36420Os.4895.1.S1_at11/117+21786984..21792146proteasome inhibitor, putative, expressed
LOC_Os07g36430Os.31021.1.S1_at10/117+21796589..21797208expressed protein
LOC_Os07g36439OsAffx.1550.1.S1_at2/117+21798568..21798777NA
LOC_Os07g36450Os.10560.1.S1_at11/117+21801037..21803585pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44707.2.S1_x_at--867--5631Chr07:21781816..21781840 (25 bp)
GACACGATACACGAGCTCCTGCGGA
LOC_Os07g36410
Os.44707.2.S1_x_at--272--4011Chr07:21781934..21781958 (25 bp)
CGTGCTACGCCAAGTACGACGACGG
LOC_Os07g36410
Os.44707.2.S1_x_at--736--8451Chr07:21781964..21781988 (25 bp)
TGGCCTTCTTCGACACCGTGGTGCG
LOC_Os07g36410
Os.44707.2.S1_x_at--726--8711Chr07:21782030..21782054 (25 bp)
TGTCCCAGGAGGAGCTCTTCGTGTG
LOC_Os07g36410
Os.44707.2.S1_x_at--986--8651Chr07:21782051..21782075 (25 bp)
TGTGGCTCCCCGTCAAGGGCATCGT
LOC_Os07g36410
Os.44707.2.S1_x_at--215--9231Chr07:21782137..21782161 (25 bp)
TCCAGGTCGCTCTTCGAGGAGCCAC
LOC_Os07g36410
Os.44707.2.S1_x_at--696--10611Chr07:21782149..21782173 (25 bp)
TTCGAGGAGCCACCCGACTGCAAGC
LOC_Os07g36410
Os.44707.2.S1_x_at--655--171Chr07:21782765..21782789 (25 bp)
ATTTTTATGGCTTCTTGGAGTTGGA
LOC_Os07g36410
Os.44707.2.S1_x_at--515--1391Chr07:21782790..21782814 (25 bp)
AGCTTGTGGAGGAGTAATTCTTGGA
LOC_Os07g36410
Os.44707.2.S1_x_at--718--731Chr07:21783974..21783998 (25 bp)
ATGTTCCTGGCCTGAGGTTCATGGG
LOC_Os07g36410
Os.44707.2.S1_x_at--1100--6151Chr07:21783987..21784011 (25 bp)
GAGGTTCATGGGAGAGGCATCATCA
LOC_Os07g36410
Target Sequence 
GACACGATACACGAGCTCCTGCGGACGCACGGGCTGCCGGGGGGGCTGCTGCCGCGAGGGGTGGAGTCGTACAGCCTCGA
CGAGGCGAACGGGCTGCTGGAGGCGCGGCTGTCGGCGCCGTGCTACGCCAAGTACGACGACGGCGACCTGGCCTTCTTCG
ACACCGTGGTGCGGGGCAACCTCAGCTTCGGCGCGCTCCGCGGCGTGGAGGGCCTGTCCCAGGAGGAGCTCTTCGTGTGG
CTCCCCGTCAAGGGCATCGTCGTCGCCGACCCGGGCTCCGGCGTCATCCTCTTCGACATCGGCTACGCCCACAAGCGGCT
CTCCAGGTCGCTCTTCGAGGAGCCACCCGACTGCAAGCCCTCCGCCTCCGCCGGCACGGACGCCGCCGACGCCGCCAGGT
GGAAGGACAGGCAAGAGCTGGAAAGTTGGAATTTTTATGGCTTCTTGGAGTTGGAAGCTTGTGGAGGAGTAATTCTTGGA
GGGGATGTTCCTGGCCTGAGGTTCATGGGAGAGGCATCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44707.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis