Browse Element(s) Details


Os.31021.1.S1_at

Description gb:AK107974.1
DB_XREF= gi:32993183
TID=Os.31021.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0534A03.18 (P0534A03.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-D10, full insert sequence.
FL= gb:AK107974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3643010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36410Os.44707.1.S1_at11/117+21781555..21784842expressed protein
LOC_Os07g36410Os.44707.2.S1_x_at11/117+21781555..21784842expressed protein
LOC_Os07g36420Os.4895.1.S1_at11/117+21786984..21792146proteasome inhibitor, putative, expressed
LOC_Os07g36430Os.31021.1.S1_at10/117+21796589..21797208expressed protein
LOC_Os07g36439OsAffx.1550.1.S1_at2/117+21798568..21798777NA
LOC_Os07g36450Os.10560.1.S1_at11/117+21801037..21803585pentatricopeptide, putative, expressed
LOC_Os07g36460OsAffx.28779.1.S1_at10/117+21812540..21814354Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g36470NANA7+21814902..21817249Vacuolar ATP synthase subunit H, putative, expressed
LOC_Os07g36480Os.12378.1.S1_at7/117+21817845..21820337vacuolar ATP synthase subunit H 2, putative, expressed
LOC_Os07g36490Os.46046.1.A1_at10/117+21821318..21823558RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31021.1.S1_at--588--10311Chr07:21797115..21797139 (25 bp)
TTTCTCTCTCTCTGAAGATGCCTCG
LOC_Os07g36430
Os.31021.1.S1_at--1104--10711Chr07:21797089..21797113 (25 bp)
TTGCTGCTCTTCTGCTTGGTGTCGA
LOC_Os07g36430
Os.31021.1.S1_at--165--10611Chr07:21797080..21797104 (25 bp)
TTCTGCTTGGTGTCGAGCCAGCTCG
LOC_Os07g36430
Os.31021.1.S1_at--981--9531Chr07:21796931..21796955 (25 bp)
TCTACTGCATGTGTATTCTCTTCTC
LOC_Os07g36430
Os.31021.1.S1_at--698--9571Chr07:21796785..21796809 (25 bp)
TCTTCTGCTACATCCGGATCACGAG
LOC_Os07g36430
Os.31021.1.S1_at--496--6391Chr07:21796751..21796775 (25 bp)
GATCGAGCCCAAATCTTGATTACTC
LOC_Os07g36430
Os.31021.1.S1_at--972--10771Chr07:21796736..21796760 (25 bp)
TTGATTACTCTATCGCATCACGCCT
LOC_Os07g36430
Os.31021.1.S1_at--1088--651Chr07:21796655..21796679 (25 bp)
ATGAACAAACGCATGTAACCCTCCT
LOC_Os07g36430
Os.31021.1.S1_at--201--9811Chr07:21796640..21796664 (25 bp)
TAACCCTCCTCATAGATTCGTTGCA
LOC_Os07g36430
Os.31021.1.S1_at--26--6591Chr07:21796626..21796650 (25 bp)
GATTCGTTGCAAAACACTGTAAAGA
LOC_Os07g36430
Os.31021.1.S1_at--319--5591Chr07:21796589..21796612 (24 bp)
GAAATAGGTGACAAATTTCCTCCTA
NONE
Target Sequence 
TTTCTCTCTCTCTGAAGATGCCTCGCTTGCTGCTCTTCTGCTTGGTGTCGAGCCAGCTCGCCATGACCGCCGTGATGGGC
CGGCCATTCCCTCTCTTCTACGGCGGCGGCGGCGGCGCGGCGGCGAGCATCGCAGATGCGCCTACTTCTTCTTCTTCTTC
AGATGGTGGTGGTGGTGGTGGTCATCTACTGCATGTGTATTCTCTTCTCGAGTCGAGCTTCGCGGAGTCGCCGATGAGCT
CGCACCACCGCAACCACAGCCCGTTCGACCGGAAGTTCGCCGGCGGCAAGGTGATACTGGGCGGCCTGGCGGCGGCCATC
TTCGCCGCCGTCTTCTGCTACATCCGGATCACGAGGAGGAAGAAGATCGAGCCCAAATCTTGATTACTCTATCGCATCAC
GCCTCAANAAAAGNAAAAAAANCAAACTCTTNNNTAATTTTTTTNCTTTTCTTACAGTGAGGAGACATGAACAAACGCAT
GTAACCCTCCTCATAGATTCGTTGCAAAACACTGTAAAGAATCCATTGCTGATGAAATAGGTGACAAATTTCCTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis