Browse Element(s) Details


Os.46046.1.A1_at

Description gb:AK120874.1
DB_XREF= gi:37990497
TID=Os.46046.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0534A03.25 (P0534A03.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026P08, full insert sequence.
FL= gb:AK120874.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3649010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36430Os.31021.1.S1_at10/117+21796589..21797208expressed protein
LOC_Os07g36439OsAffx.1550.1.S1_at2/117+21798568..21798777NA
LOC_Os07g36450Os.10560.1.S1_at11/117+21801037..21803585pentatricopeptide, putative, expressed
LOC_Os07g36460OsAffx.28779.1.S1_at10/117+21812540..21814354Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g36470NANA7+21814902..21817249Vacuolar ATP synthase subunit H, putative, expressed
LOC_Os07g36480Os.12378.1.S1_at7/117+21817845..21820337vacuolar ATP synthase subunit H 2, putative, expressed
LOC_Os07g36490Os.46046.1.A1_at10/117+21821318..21823558RNA recognition motif family protein, expressed
LOC_Os07g36500NANA7+21825524..21826070Histone H4, putative, expressed
LOC_Os07g36510OsAffx.8277.2.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36510OsAffx.21885.1.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36520OsAffx.22562.1.S1_at11/117+21835300..21838224F-box domain containing protein
LOC_Os07g36530OsAffx.28781.1.S1_at11/117+21841734..21844044F-box domain containing protein
LOC_Os07g36544Os.10550.1.S1_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36544Os.10550.1.S1_x_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46046.1.A1_at--578--1751NONE
ACCTCTTCGTCTCAGGGTTGAATAA
NONE
Os.46046.1.A1_at--951--2591Chr07:21822785..21822809 (25 bp)
AACGCACGACATCTGACGGACTTAG
LOC_Os07g36490
Os.46046.1.A1_at--606--6011Chr07:21823236..21823260 (25 bp)
GAGAGAAGCACAGCAGCCGGCCCAA
LOC_Os07g36490
Os.46046.1.A1_at--1055--6491Chr07:21823298..21823322 (25 bp)
GATAGTTGTCTCTACGATCAGGATT
LOC_Os07g36490
Os.46046.1.A1_at--1021--6431Chr07:21823313..21823337 (25 bp)
GATCAGGATTACCTTCTATTGGACA
LOC_Os07g36490
Os.46046.1.A1_at--531--371Chr07:21823373..21823397 (25 bp)
ATCACTCTCCTTGATATTTCGTCAG
LOC_Os07g36490
Os.46046.1.A1_at--493--8271Chr07:21823418..21823442 (25 bp)
GGCATGAACATCTCCTTAGTAACTT
LOC_Os07g36490
Os.46046.1.A1_at--715--10471Chr07:21823441..21823465 (25 bp)
TTACGGTGCCGTTTTGTCTGCTACT
LOC_Os07g36490
Os.46046.1.A1_at--877--7171Chr07:21823456..21823480 (25 bp)
GTCTGCTACTGTCTGCTGGGTGACT
LOC_Os07g36490
Os.46046.1.A1_at--1009--3891Chr07:21823471..21823495 (25 bp)
CTGGGTGACTGTACTCTGTGAGCTT
LOC_Os07g36490
Os.46046.1.A1_at--307--8751Chr07:21823497..21823521 (25 bp)
TGTAACTATACAACTGCCTTCATTT
LOC_Os07g36490
Target Sequence 
ACCTCTTCGTCTCAGGGTTGAATAAACGCACGACATCTGACGGACTTAGGGAANCCTTCTCGAAATTCGGTCAGGTTATT
GAAGCTAGAGTNAATCACTGATAGAATATCTGGATACTNCTCGAGGATTTGGCTTTGTCAAATATGCAACTGTTGAAGAA
NCCGGTGAGGGCATAAAAGGCATGGATGGAAAGTTNCCTCGATGGTTGGGTGATATTTGCCGAGTACGCCAAGCAGAGAG
AAGCACAGCAGCCGGCCCAACCAGCAGCATCAACTAGTTACCAATACTCCAACCAATGATAGTTGTCTCTACGATCAGGA
TTACCTTCTATTGGACAATATTGTNCGCTATTTTACCATGTGAAAACTGAAAATCACTCTCCTTGATATTTCGTCAGGGA
GAAATTTTAGTGTGCACGGCATGAACATCTCCTTAGTAACTTACGGTGCCGTTTTGTCTGCTACTGTCTGCTGGGTGACT
GTACTCTGTGAGCTTATGTAACTATACAACTGCCTTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46046.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis