Browse Element(s) Details


OsAffx.22562.1.S1_at

Description tigr:9635.m03611
TID=OsAffx.22562.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3652011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36460OsAffx.28779.1.S1_at10/117+21812540..21814354Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g36470NANA7+21814902..21817249Vacuolar ATP synthase subunit H, putative, expressed
LOC_Os07g36480Os.12378.1.S1_at7/117+21817845..21820337vacuolar ATP synthase subunit H 2, putative, expressed
LOC_Os07g36490Os.46046.1.A1_at10/117+21821318..21823558RNA recognition motif family protein, expressed
LOC_Os07g36500NANA7+21825524..21826070Histone H4, putative, expressed
LOC_Os07g36510OsAffx.8277.2.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36510OsAffx.21885.1.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36520OsAffx.22562.1.S1_at11/117+21835300..21838224F-box domain containing protein
LOC_Os07g36530OsAffx.28781.1.S1_at11/117+21841734..21844044F-box domain containing protein
LOC_Os07g36544Os.10550.1.S1_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36544Os.10550.1.S1_x_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36560Os.30000.1.S1_at10/117+21853033..21855198Transferase family protein, expressed
LOC_Os07g36570Os.33145.1.S1_at11/117+21861415..21866821D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22562.1.S1_at--962--8851Chr07:21836150..21836174 (25 bp)
TGATGCGGCGCTTCTACATCGTCGA
LOC_Os07g36520
OsAffx.22562.1.S1_at--354--5771Chr07:21836173..21836197 (25 bp)
GACGAGCTCGTGCTTAGCTTCGGAA
LOC_Os07g36520
OsAffx.22562.1.S1_at--325--2771Chr07:21837464..21837488 (25 bp)
AAGACGTTTCTGAATGCTACGAGCA
LOC_Os07g36520
OsAffx.22562.1.S1_at--822--7751Chr07:21837520..21837544 (25 bp)
GGTGACGACGAGACGGCACGCCTTT
LOC_Os07g36520
OsAffx.22562.1.S1_at--1045--1811Chr07:21837537..21837561 (25 bp)
ACGCCTTTTCATCAGCAGTGTTGCA
LOC_Os07g36520
OsAffx.22562.1.S1_at--582--3451Chr07:21837552..21837576 (25 bp)
CAGTGTTGCATCTCCTCAGGAAATC
LOC_Os07g36520
OsAffx.22562.1.S1_at--504--2711Chr07:21837593..21837617 (25 bp)
AAGCTTCTGATTCGTCTGCCTCGGA
LOC_Os07g36520
OsAffx.22562.1.S1_at--561--2431Chr07:21837940..21837964 (25 bp)
AAAAGCTGCACGGAGGGCTGTCCTT
LOC_Os07g36520
OsAffx.22562.1.S1_at--115--8711Chr07:21837958..21837982 (25 bp)
TGTCCTTGCTCTCTGACGGATAGCT
LOC_Os07g36520
OsAffx.22562.1.S1_at--534--7951Chr07:21837975..21837999 (25 bp)
GGATAGCTGCAACACTGACAAGATT
LOC_Os07g36520
OsAffx.22562.1.S1_at--391--10691Chr07:21838083..21838107 (25 bp)
TTGCCAAGCGCCAATCCTTAAGAAG
LOC_Os07g36520
Target Sequence 
TGATGCGGCGCTTCTACATCGTCGACGAGCTCGTGCTTAGCTTCGGAATTTCACCGGGGATCAGAGGGTACAAGACGTTT
CTGAATGCTACGAGCATGATTGCAAAGTGTGAGGTTTTGGAGGTGCAGGTGACGACGAGACGGCACGCCTTTTCATCAGC
AGTGTTGCATCTCCTCAGGAAATCAGGTGACGACGAGACGAAGCTTCTGATTCGTCTGCCTCGGATGGGGAACAAAAGCT
GCACGGAGGGCTGTCCTTGCTCTCTGACGGATAGCTGCAACACTGACAAGATTCAGTTAGATTCGCTGAAAGAGGTAGAA
ATATTGGAGTTCCAGGGAGAATTTAATCAGATGAAATTTATCAACCTGCTGCTCGATTGCCAAGCGCCAATCCTTAAGAA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis