Browse Element(s) Details


Os.30000.1.S1_at

Description gb:AK109553.1
DB_XREF= gi:32994762
TID=Os.30000.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative hypersensitivity-related (hsr) protein (P0534A03.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C01, full insert sequence.
FL= gb:AK109553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3656010/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36510OsAffx.8277.2.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36510OsAffx.21885.1.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36520OsAffx.22562.1.S1_at11/117+21835300..21838224F-box domain containing protein
LOC_Os07g36530OsAffx.28781.1.S1_at11/117+21841734..21844044F-box domain containing protein
LOC_Os07g36544Os.10550.1.S1_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36544Os.10550.1.S1_x_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36560Os.30000.1.S1_at10/117+21853033..21855198Transferase family protein, expressed
LOC_Os07g36570Os.33145.1.S1_at11/117+21861415..21866821D-mannose binding lectin family protein, expressed
LOC_Os07g36580OsAffx.16585.1.S1_s_at11/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.16585.1.S1_at9/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.10158.1.S1_x_at1/117+21868352..21870747hypothetical protein
LOC_Os07g36590Os.32819.1.S1_at11/117+21875197..21881678KI domain interacting kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30000.1.S1_at--227--1071Chr07:21854767..21854791 (25 bp)
AGGGCGTACCTCGTGTCCGACGTGA
LOC_Os07g36560
Os.30000.1.S1_at--895--3911Chr07:21854863..21854887 (25 bp)
CTGGCGACGTTTCACTTGACGGTGA
LOC_Os07g36560
Os.30000.1.S1_at--406--4171Chr07:21854936..21854960 (25 bp)
CGCCGGCCATGGAAAGGCTCGAGTT
LOC_Os07g36560
Os.30000.1.S1_at--253--2311Chr07:21854948..21854972 (25 bp)
AAAGGCTCGAGTTGGACGTGCAGAT
LOC_Os07g36560
Os.30000.1.S1_at--609--5751Chr07:21854962..21854986 (25 bp)
GACGTGCAGATGTCGTTGAATCATT
LOC_Os07g36560
Os.30000.1.S1_at--433--91NONE
ATTCCTACGTGTTCTATGTTGATTG
NONE
Os.30000.1.S1_at--798--8811Chr07:21855019..21855043 (25 bp)
TGATTGTTAGATTCGGTACATCCGT
LOC_Os07g36560
Os.30000.1.S1_at--19--7851Chr07:21855033..21855057 (25 bp)
GGTACATCCGTACATGCTATACGTT
LOC_Os07g36560
Os.30000.1.S1_at--1030--311Chr07:21855051..21855075 (25 bp)
ATACGTTCATATTGTTCATGTCACC
LOC_Os07g36560
Os.30000.1.S1_at--1023--7311Chr07:21855078..21855102 (25 bp)
GTGCATGTTTTGTTATGTCCTACGT
LOC_Os07g36560
Os.30000.1.S1_at--223--8711Chr07:21855093..21855117 (25 bp)
TGTCCTACGTAACTCCTGCATATAA
LOC_Os07g36560
Target Sequence 
AGGGCGTACCTCGTGTCCGACGTGACGCGGGCCGGGTTCGAGGGCGTCGACTTCGGGTGGGGGGAGGGGGCGTACGGCGG
GCCGGCGGCGGCGACGCTGGCGACGTTTCACTTGACGGTGAAGGATGCGAGCGGGGAGGAGGTGATCGCCGTGCCGATGT
GCTTGCCGGCGCCGGCCATGGAAAGGCTCGAGTTGGACGTGCAGATGTCGTTGAATCATTGAACGATATATACATTCCTA
CGTGTTCTATGTTGATTGTTAGATTCGGTACATCCGTACATGCTATACGTTCATATTGTTCATGTCACCATGTGCATGTT
TTGTTATGTCCTACGTAACTCCTGCATATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis