Browse Element(s) Details


OsAffx.16585.1.S1_s_at

Description gb:XM_353987.1
DB_XREF= gi:35189407
TID=OsAffx.16585.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3658011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36530OsAffx.28781.1.S1_at11/117+21841734..21844044F-box domain containing protein
LOC_Os07g36544Os.10550.1.S1_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36544Os.10550.1.S1_x_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36560Os.30000.1.S1_at10/117+21853033..21855198Transferase family protein, expressed
LOC_Os07g36570Os.33145.1.S1_at11/117+21861415..21866821D-mannose binding lectin family protein, expressed
LOC_Os07g36580OsAffx.16585.1.S1_s_at11/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.16585.1.S1_at9/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.10158.1.S1_x_at1/117+21868352..21870747hypothetical protein
LOC_Os07g36590Os.32819.1.S1_at11/117+21875197..21881678KI domain interacting kinase 1, putative, expressed
LOC_Os07g36600Os.27293.2.S1_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_a_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_s_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_at7/117+21893171..21897033universal stress protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16585.1.S1_s_at--627--10351Chr07:21869973..21869997 (25 bp)
TTTTTCCAACTCCTTTCAGCACCTG
LOC_Os07g36580
OsAffx.16585.1.S1_s_at--362--4531Chr07:21869997..21870021 (25 bp)
GCCCACCGTTGGATTTTCACATTTT
LOC_Os07g36580
OsAffx.16585.1.S1_s_at--336--10511Chr07:21870012..21870036 (25 bp)
TTCACATTTTTGCTGACTGCGGCTG
LOC_Os07g36580
OsAffx.16585.1.S1_s_at--1158--5011Chr07:21870036..21870060 (25 bp)
GCAGTTCAAGTGTGCAACCCGTGTT
LOC_Os07g36580
OsAffx.16585.1.S1_s_at--749--9711Chr07:21870041..21870065 (25 bp)
TCAAGTGTGCAACCCGTGTTAGGTC
LOC_Os07g36580
OsAffx.16585.1.S1_s_at--1041--8971Chr07:21870048..21870072 (25 bp)
TGCAACCCGTGTTAGGTCCGGCGCG
LOC_Os07g36580
OsAffx.16585.1.S1_s_at--1051--431Chr07:21870502..21870526 (25 bp)
ATCTTACAGAGAAACGGCATCGGTC
LOC_Os07g36580
OsAffx.16585.1.S1_s_at--22--6031Chr07:21870601..21870625 (25 bp)
GAGAGGAACAGTAACCCGCTACATT
LOC_Os07g36580
OsAffx.16585.1.S1_s_at--988--2611Chr07:21870613..21870637 (25 bp)
AACCCGCTACATTATCGGATAGACG
LOC_Os07g36580
OsAffx.16585.1.S1_s_at--959--9431Chr07:21870627..21870651 (25 bp)
TCGGATAGACGAACCTGAAACAAAC
LOC_Os07g36580
OsAffx.16585.1.S1_s_at--722--8951Chr07:21870642..21870666 (25 bp)
TGAAACAAACCAGCCATGCATAGCT
LOC_Os07g36580
Target Sequence 
TTTTTCCAACTCCTTTCAGCACCTGCCCACCGTTGGATTTTCACATTTTTGCTGACTGCGGCTGCAGTTCAAGTGTGCAA
CCCGTGTTAGGTCCGGCGCGCCATATAGGGTATTACAAGAATTCATATGAAAAATGTATCTTACAGAGAAACGGCATCGG
TCGGCAGGGGAAAAAAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGAGAGA
GGAACAGTAACCCGCTACATTATCGGATAGACGAACCTGAAACAAACCAGCCATGCATAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16585.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis