Browse Element(s) Details


OsAffx.10158.1.S1_x_at

Description gb:NM_186924.1
DB_XREF= gi:34900933
GEN=OJ1354_H07.17
TID=OsAffx.10158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (OJ1354_H07.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g093801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g365801/11hypothetical protein
LOC_Os12g288301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09350Os.37024.1.S1_s_at11/114+4945533..4955300expressed protein
LOC_Os04g09350Os.6217.1.S1_at11/114+4945533..4955300expressed protein
LOC_Os04g09350Os.36350.1.A1_at11/114+4945533..4955300expressed protein
LOC_Os04g09350Os.6217.1.S2_at11/114+4945533..4955300expressed protein
LOC_Os04g09350Os.52051.1.S1_x_at3/114+4945533..4955300expressed protein
LOC_Os04g09350Os.51910.1.S1_x_at2/114+4945533..4955300expressed protein
LOC_Os04g09350Os.52051.1.S1_at2/114+4945533..4955300expressed protein
LOC_Os04g09350Os.51910.1.S1_at1/114+4945533..4955300expressed protein
LOC_Os04g09350Os.38269.1.S1_x_at1/114+4945533..4955300expressed protein
LOC_Os04g09360OsAffx.19306.1.S1_at1/114+4956193..4964722retrotransposon protein, putative, unclassified
LOC_Os04g09360OsAffx.22699.1.S1_x_at1/114+4956193..4964722retrotransposon protein, putative, unclassified
LOC_Os04g09370NANA4+4965579..4967436hypothetical protein
LOC_Os04g09380OsAffx.30226.2.S1_x_at3/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.442.1.S1_x_at3/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.442.1.S1_at2/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.24587.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.10158.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.30226.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.25414.1.S1_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.9177.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.30226.4.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09390Os.54304.1.S1_at11/114+4985119..4986213Lectin precursor, putative, expressed
LOC_Os04g09410OsAffx.25818.3.S1_at9/114+5005838..5008914hAT family dimerisation domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10158.1.S1_x_at--1005--3371Chr07:9008963..9008987 (25 bp)
CAGCCATGTGGCTCTCCAGCCTGGC
NONE
OsAffx.10158.1.S1_x_at--77--4571Chr07:9008929..9008953 (25 bp)
GCGCCTCGCGAGTCTCAGAAGCAGC
NONE
OsAffx.10158.1.S1_x_at--919--3791Chr07:9008925..9008949 (25 bp)
CTCGCGAGTCTCAGAAGCAGCCAGG
NONE
OsAffx.10158.1.S1_x_at--117--9351Chr07:9008924..9008948 (25 bp)
TCGCGAGTCTCAGAAGCAGCCAGGG
NONE
OsAffx.10158.1.S1_x_at--919--8014Chr04:16313383..16313407 (25 bp)
GGAGGAGACCCAGGCTGAACCGCCA
NONE
OsAffx.10158.1.S1_x_at--297--1398Chr11:19559901..19559925 (25 bp)
AGACCCAGGCTGAACCGCCATCAAT
NONE
OsAffx.10158.1.S1_x_at--503--9112Chr11:19551183..19551205 (23 bp)
AGGCTGAACCGCCATCAATGCGCGC
NONE
OsAffx.10158.1.S1_x_at--323--89911Chr11:19551187..19551259 (25 bp)
TGAACCGCCATCAATGCGCGCGGCG
NONE
OsAffx.10158.1.S1_x_at--1130--83535Chr12:17051271..17051290 (20 bp)
TGTCCCTCACCGCATTTAATACGCT
NONE
OsAffx.10158.1.S1_x_at--18--3093Chr07:9008742..9008766 (25 bp)
AATACGCTAAGGGCAGACGTGCGGT
NONE
OsAffx.10158.1.S1_x_at--675--3412Chr07:9008729..9008753 (25 bp)
CAGACGTGCGGTGCCGTCCGACTGA
NONE
Target Sequence 
CAGCCATGTGGCTCTCCAGCCTGGCCCTCCCCCCGCGCCTCGCGAGTCTCAGAAGCAGCCAGGGGGCCTCGGGGTGCCAC
GTCACGCCCCTCGGGCCCTCGCGCTGCCTTGCCCTGAGGCCCTCGCCCAACTGCCATGTGGCGGGGGGAGCGAGCGGGGA
GGAGACCCAGGCTGAACCGCCATCAATGCGCGCGGCGCCCCAACTGTCCCTCACCGCATTTAATACGCTAAGGGCAGACG
TGCGGTGCCGTCCGACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10158.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis