Browse Element(s) Details


Os.6217.1.S2_at

Description gb:AK069921.1
DB_XREF= gi:32979945
TID=Os.6217.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037C04, full insert sequence.
FL= gb:AK069845.1 gb:AK069921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0935011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09300Os.50463.1.S1_at10/114+4921901..4922499expressed protein
LOC_Os04g09310Os.10827.1.S1_x_at6/114+4924504..4928088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g09310Os.46055.2.S1_x_at3/114+4924504..4928088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g09310OsAffx.18122.1.S1_x_at1/114+4924504..4928088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g09320NANA4+4928709..4929095hypothetical protein
LOC_Os04g09330OsAffx.25936.7.S1_s_at7/114+4934888..4940061hypothetical protein
LOC_Os04g09330OsAffx.25936.2.S1_x_at6/114+4934888..4940061hypothetical protein
LOC_Os04g09330OsAffx.25936.1.S1_s_at6/114+4934888..4940061hypothetical protein
LOC_Os04g09330Os.2358.1.S1_at4/114+4934888..4940061hypothetical protein
LOC_Os04g09330OsAffx.25936.5.S1_x_at2/114+4934888..4940061hypothetical protein
LOC_Os04g09330OsAffx.22548.1.S1_at1/114+4934888..4940061hypothetical protein
LOC_Os04g09330OsAffx.25936.1.S1_at1/114+4934888..4940061hypothetical protein
LOC_Os04g09340NANA4+4944873..4945157hypothetical protein
LOC_Os04g09350Os.37024.1.S1_s_at11/114+4945533..4955300expressed protein
LOC_Os04g09350Os.6217.1.S1_at11/114+4945533..4955300expressed protein
LOC_Os04g09350Os.36350.1.A1_at11/114+4945533..4955300expressed protein
LOC_Os04g09350Os.6217.1.S2_at11/114+4945533..4955300expressed protein
LOC_Os04g09350Os.52051.1.S1_x_at3/114+4945533..4955300expressed protein
LOC_Os04g09350Os.51910.1.S1_x_at2/114+4945533..4955300expressed protein
LOC_Os04g09350Os.52051.1.S1_at2/114+4945533..4955300expressed protein
LOC_Os04g09350Os.51910.1.S1_at1/114+4945533..4955300expressed protein
LOC_Os04g09350Os.38269.1.S1_x_at1/114+4945533..4955300expressed protein
LOC_Os04g09360OsAffx.19306.1.S1_at1/114+4956193..4964722retrotransposon protein, putative, unclassified
LOC_Os04g09360OsAffx.22699.1.S1_x_at1/114+4956193..4964722retrotransposon protein, putative, unclassified
LOC_Os04g09370NANA4+4965579..4967436hypothetical protein
LOC_Os04g09380OsAffx.30226.2.S1_x_at3/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.442.1.S1_x_at3/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.442.1.S1_at2/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.24587.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.10158.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.30226.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.25414.1.S1_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.9177.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.30226.4.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6217.1.S2_at--45--6811Chr04:4954743..4954767 (25 bp)
GTTTTTCAGATCCATTATTTGATTA
LOC_Os04g09350
Os.6217.1.S2_at--915--3431Chr04:4954749..4954773 (25 bp)
CAGATCCATTATTTGATTAATCCAA
LOC_Os04g09350
Os.6217.1.S2_at--696--6551Chr04:4954763..4954787 (25 bp)
GATTAATCCAATTTGATATTCAATT
LOC_Os04g09350
Os.6217.1.S2_at--552--10191Chr04:4954779..4954803 (25 bp)
TATTCAATTTTTTTCCTCAAGGGAT
LOC_Os04g09350
Os.6217.1.S2_at--385--10371Chr04:4954787..4954811 (25 bp)
TTTTTTCCTCAAGGGATGACTGACT
LOC_Os04g09350
Os.6217.1.S2_at--458--10391Chr04:4954789..4954813 (25 bp)
TTTTCCTCAAGGGATGACTGACTTC
LOC_Os04g09350
Os.6217.1.S2_at--1048--10651Chr04:4954791..4954815 (25 bp)
TTCCTCAAGGGATGACTGACTTCTC
LOC_Os04g09350
Os.6217.1.S2_at--1103--9211Chr04:4954792..4954816 (25 bp)
TCCTCAAGGGATGACTGACTTCTCA
LOC_Os04g09350
Os.6217.1.S2_at--139--3192Chr08:19870822..19870846 (25 bp)
CAATTTTTTGTTTACTCAGTTGATT
NONE
Os.6217.1.S2_at--974--10392Chr08:19870827..19870851 (25 bp)
TTTTGTTTACTCAGTTGATTCCATC
NONE
Os.6217.1.S2_at--913--10792Chr08:19870829..19870853 (25 bp)
TTGTTTACTCAGTTGATTCCATCTG
NONE
Target Sequence 
GTTTTTCAGATCCATTATTTGATTAATCCAATTTGATATTCAATTTTTTTCCTCAAGGGATGACTGACTTCTCAATTTTT
TGTTTACTCAGTTGATTCCATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6217.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis