Browse Element(s) Details


Os.2358.1.S1_at

Description gb:AK119564.1
DB_XREF= gi:37989187
TID=Os.2358.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2358 (NCBI UniGene Cluster)
UG_TITLE=HAK4 (HAK4) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-A03, full insert sequence.
FL= gb:AK071698.1 gb:AK119564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3634011/11K+ potassium transporter family protein, expressed
LOC_Os04g093304/11hypothetical protein
LOC_Os10g134904/11retrotransposon protein, putative, unclassified
LOC_Os08g279904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g114303/11hypothetical protein
LOC_Os12g288903/11hypothetical protein
LOC_Os07g247702/11hypothetical protein
LOC_Os07g457202/11retrotransposon protein, putative, unclassified
LOC_Os05g137302/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36320Os.12724.1.S1_a_at11/118+22745831..22750106Glutamate decarboxylase, putative, expressed
LOC_Os08g36330OsAffx.17357.1.S1_at8/118+22754798..22759753DNA polymerase epsilon subunit B family protein, expressed
LOC_Os08g36340Os.2358.1.S1_at11/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.45796.1.S1_at11/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.2.S1_x_at10/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40360.1.S1_at9/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.5.S1_x_at8/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.4.S1_x_at6/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40360.1.S1_x_at5/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.4.S1_at1/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340OsAffx.21921.1.S1_at1/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340OsAffx.14669.1.S1_at1/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36350NANA8+22783240..22783611hypothetical protein
LOC_Os08g36360NANA8+22784868..22788200retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36370NANA8+22788575..22792322hypothetical protein
LOC_Os08g36380OsAffx.29556.1.S1_at10/118+22794762..22798182expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0016020cellular_componentmembrane
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2358.1.S1_at--1059--9411Chr08:22774894..22774918 (25 bp)
TCGGGTTCTACGAGTTGCTGCACGG
LOC_Os08g36340
Os.2358.1.S1_at--975--10571Chr08:22774899..22774923 (25 bp)
TTCTACGAGTTGCTGCACGGCGCGT
LOC_Os08g36340
Os.2358.1.S1_at--565--4011Chr08:22774967..22774991 (25 bp)
CGTCGAGATCGGCATGCTCTACAAG
LOC_Os08g36340
Os.2358.1.S1_at--270--6411Chr08:22774973..22774997 (25 bp)
GATCGGCATGCTCTACAAGGCCTAA
LOC_Os08g36340
Os.2358.1.S1_at--258--9831Chr08:22774986..22775010 (25 bp)
TACAAGGCCTAACGGCGCCGAACGC
LOC_Os08g36340
Os.2358.1.S1_at--1010--10451Chr08:22775056..22775080 (25 bp)
TTACCATTAGCAGTATAACCCCTAT
LOC_Os08g36340
Os.2358.1.S1_at--970--10451Chr08:22775062..22775086 (25 bp)
TTAGCAGTATAACCCCTATTATTAG
LOC_Os08g36340
Os.2358.1.S1_at--874--7576Chr12:22242847..22242871 (25 bp)
ATGTAATAGATCATGACTCGGGTAT
NONE
Os.2358.1.S1_at--444--89564Chr12:17118263..17118287 (25 bp)
TGACTCGGGTATTACGTTTCCTTAT
NONE
Os.2358.1.S1_at--301--43192Chr12:22242879..22242903 (25 bp)
CCTTATATATTACGGAACAGCCTAA
NONE
Os.2358.1.S1_at--202--9596Chr12:5276319..5276343 (25 bp)
CGGAACAGCCTAAAGTCCTGGTTTG
NONE
Target Sequence 
TCGGGTTCTACGAGTTGCTGCACGGCGCGTGCCGCTCCGCGCTGCCGGCGCTCGGGATCCCGCTGCAGCAGCGCGTCGAG
ATCGGCATGCTCTACAAGGCCTAACGGCGCCGAACGCCACGCACGCGCCCCACGAATCCGTACGTACGTACGTGNCCATT
AATTACCATTAGCAGTATAACCCCTATTATTAGTNTGGNNNNNNNNNNNNNNNNANNNNNNTNNNNNATNGNNATNNNNN
NANTCANANNGNNNANCTTATATCTATAGAATATGTAATAGATCATGACTCGGGTATTACGTTTCCTTATATATTACGGA
ACAGCCTAAAGTCCTGGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis