Browse Element(s) Details


Os.45796.1.S1_at

Description gb:NM_183609.1
DB_XREF= gi:34894345
TID=Os.45796.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3789011/11oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os08g3634011/11K+ potassium transporter family protein, expressed
LOC_Os12g273109/11Transferase family protein
LOC_Os08g142806/11hypothetical protein
LOC_Os09g043394/11expressed protein
LOC_Os04g056201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37856Os.54111.1.S1_at11/112+22866244..22874372expressed protein
LOC_Os02g37856Os.51012.1.S1_at11/112+22866244..22874372expressed protein
LOC_Os02g37862Os.11104.1.S1_at11/112+22876293..2287828760S ribosomal protein L6, putative, expressed
LOC_Os02g37870Os.23169.1.S1_at11/112+22879235..22882257Brix domain containing protein 2, putative, expressed
LOC_Os02g37880Os.15913.1.S1_a_at11/112+22886643..22891558Protein kinase domain containing protein, expressed
LOC_Os02g37890Os.45796.1.S1_at11/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.2.S1_x_at7/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890OsAffx.3900.1.S1_at5/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.4.S1_x_at4/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37900Os.40360.1.S1_x_at1/112+22901770..22902489hypothetical protein
LOC_Os02g37910Os.18483.1.S1_at11/112+22905097..22909797phosphodiesterase/alkaline phosphatase D, putative, expressed
LOC_Os02g37920Os.23276.1.S1_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37920Os.23276.1.S2_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37930Os.11900.1.S1_at11/112+22921729..22924608Hypoxia induced protein conserved region containing protein, expressed
LOC_Os02g37940Os.9038.1.S1_at10/112+22925110..22927625expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0008152biological_processmetabolism
GO:0009605biological_processresponse to external stimulus
GO:0016020cellular_componentmembrane
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0016740molecular_functiontransferase activity
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45796.1.S1_at--964--661120Chr12:27201360..27201384 (25 bp)
GTTGGGCAACAACATCAACTCTCCT
NONE
Os.45796.1.S1_at--156--25566Chr12:27201376..27201400 (25 bp)
AACTCTCCTCCAATTATTTGTCTTC
NONE
Os.45796.1.S1_at--22--99570Chr12:27201414..27201438 (25 bp)
TACGCAACTGCCGATAGAGGATCTC
NONE
Os.45796.1.S1_at--440--61780Chr12:27201430..27201454 (25 bp)
GAGGATCTCATCGTTATCATCGGCT
NONE
Os.45796.1.S1_at--615--4970Chr12:7857232..7857256 (25 bp)
ATCGGCTGCTACATCGCTATTGACT
NONE
Os.45796.1.S1_at--440--25164Chr12:27201520..27201544 (25 bp)
AACATAGCCTACTCTGCTGCCGTTG
NONE
Os.45796.1.S1_at--19--47962Chr12:27201535..27201559 (25 bp)
GCTGCCGTTGATGGGAAACTTCGTC
NONE
Os.45796.1.S1_at--97--55563Chr12:27201549..27201573 (25 bp)
GAAACTTCGTCATCATAGTCGGCTA
NONE
Os.45796.1.S1_at--310--4371Chr12:27201560..27201584 (25 bp)
ATCATAGTCGGCTATCTCTGTTGCC
NONE
Os.45796.1.S1_at--1017--87972Chr12:27201578..27201602 (25 bp)
TGTTGCCGCTAATCATCATTACCGT
NONE
Os.45796.1.S1_at--407--35580Chr12:27201591..27201615 (25 bp)
CATCATTACCGTCGGATGCGTTTGT
NONE
Target Sequence 
GTTGGGCAACAACATCAACTCTCCTCCAATTATTTGTCTTCACGGTTGGCCTACTACGCAACTGCCGATAGAGGATCTCA
TCGTTATCATCGGCTGCTACATCGCTATTGACTGGATCACCGACATCGTCATCTTCATCAACATCTTGTCAAGCCTCATC
AACATAGCCTACTCTGCTGCCGTTGATGGGAAACTTCGTCATCATAGTCGGCTATCTCTGTTGCCGCTAATCATCATTAC
CGTCGGATGCGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis