Browse Element(s) Details


Os.23169.1.S1_at

Description gb:AK060611.1
DB_XREF= gi:32970629
TID=Os.23169.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033096G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-E06, full insert sequence.
FL= gb:AK102534.1 gb:AK060611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3787011/11Brix domain containing protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37850OsAffx.24621.1.S1_at11/112+22859951..22863677expressed protein
LOC_Os02g37856Os.54111.1.S1_at11/112+22866244..22874372expressed protein
LOC_Os02g37856Os.51012.1.S1_at11/112+22866244..22874372expressed protein
LOC_Os02g37862Os.11104.1.S1_at11/112+22876293..2287828760S ribosomal protein L6, putative, expressed
LOC_Os02g37870Os.23169.1.S1_at11/112+22879235..22882257Brix domain containing protein 2, putative, expressed
LOC_Os02g37880Os.15913.1.S1_a_at11/112+22886643..22891558Protein kinase domain containing protein, expressed
LOC_Os02g37890Os.45796.1.S1_at11/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.2.S1_x_at7/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890OsAffx.3900.1.S1_at5/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.4.S1_x_at4/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37900Os.40360.1.S1_x_at1/112+22901770..22902489hypothetical protein
LOC_Os02g37910Os.18483.1.S1_at11/112+22905097..22909797phosphodiesterase/alkaline phosphatase D, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23169.1.S1_at--1110--8231Chr02:22880368..22880392 (25 bp)
GGCAAAGCCTTTTCATGACCATGTG
LOC_Os02g37870
Os.23169.1.S1_at--348--1731Chr02:22880351..22880375 (25 bp)
ACCATGTGTTTGTCTTCTCTATCGT
LOC_Os02g37870
Os.23169.1.S1_at--183--411Chr02:22880191..22880214 (24 bp)
ATCAGATTTCTGTTCCCCACAATGA
LOC_Os02g37870
Os.23169.1.S1_at--982--6151Chr02:22880035..22880058 (24 bp)
GAGGTTGGCCCAAGGTTCTGTTTGA
LOC_Os02g37870
Os.23169.1.S1_at--564--10611Chr02:22879984..22880008 (25 bp)
TTCGGTGGCCCTACATTGTACGAGA
LOC_Os02g37870
Os.23169.1.S1_at--754--1471Chr02:22879962..22879986 (25 bp)
AGAATCCATTCTATGTGTCTCCCAA
LOC_Os02g37870
Os.23169.1.S1_at--195--9331Chr02:22879651..22879967 (25 bp)
TCCCAATCAGATCCGTGCACTAGAG
LOC_Os02g37870
Os.23169.1.S1_at--26--6251Chr02:22879561..22879585 (25 bp)
GATGGAGAACACTCTGGAGCCTGAT
LOC_Os02g37870
Os.23169.1.S1_at--827--8211Chr02:22879416..22879440 (25 bp)
GGAATTTCTTGTATGACACCATGAG
LOC_Os02g37870
Os.23169.1.S1_at--872--10331Chr02:22879368..22879392 (25 bp)
TTTAGTGTCCTATCCTAACTCCATC
LOC_Os02g37870
Os.23169.1.S1_at--1038--9211Chr02:22879349..22879373 (25 bp)
TCCATCTCGTCTCGTGCTTAAAAGT
LOC_Os02g37870
Target Sequence 
GGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCTATCGTTGATGACCATGTTTGGTTTAGAAATTATCAGATTTCTG
TTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGGTTGGCCCAAGGTTCTGT
TTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCA
GATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCACG
AGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAGTTCAGCTATAGTGATTGAACC
ATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTAT
GACACCATGAGTCTATTATTTACATGAATAAGATTTTAGTGTCCTATCCTAACTCCATCTCGTCTCGTGCTTAAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis