Browse Element(s) Details


Os.11104.1.S1_at

Description gb:AK072777.1
DB_XREF= gi:32982800
TID=Os.11104.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139B06, full insert sequence.
FL= gb:AK072777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3786211/1160S ribosomal protein L6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37850OsAffx.24621.1.S1_at11/112+22859951..22863677expressed protein
LOC_Os02g37856Os.54111.1.S1_at11/112+22866244..22874372expressed protein
LOC_Os02g37856Os.51012.1.S1_at11/112+22866244..22874372expressed protein
LOC_Os02g37862Os.11104.1.S1_at11/112+22876293..2287828760S ribosomal protein L6, putative, expressed
LOC_Os02g37870Os.23169.1.S1_at11/112+22879235..22882257Brix domain containing protein 2, putative, expressed
LOC_Os02g37880Os.15913.1.S1_a_at11/112+22886643..22891558Protein kinase domain containing protein, expressed
LOC_Os02g37890Os.45796.1.S1_at11/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.2.S1_x_at7/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890OsAffx.3900.1.S1_at5/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.4.S1_x_at4/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37900Os.40360.1.S1_x_at1/112+22901770..22902489hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11104.1.S1_at--1136--7111Chr02:22876888..22876912 (25 bp)
GTCATTGCCACATCCACGAAGGTTG
LOC_Os02g37862
Os.11104.1.S1_at--135--4211Chr02:22876831..22876855 (25 bp)
GACAAGTACTTTGCCCGGGACAAGA
LOC_Os02g37862
Os.11104.1.S1_at--1098--5231Chr02:22876654..22876678 (25 bp)
GAATCTGCCCGACTTCAAGAAGGAT
LOC_Os02g37862
Os.11104.1.S1_at--105--3211Chr02:22876600..22876624 (25 bp)
CAAGGCTATCGAGGTTGTCCCAGAC
LOC_Os02g37862
Os.11104.1.S1_at--207--8971Chr02:22876574..22876598 (25 bp)
TGAAATCCTATCTTGGTGCCCGGTT
LOC_Os02g37862
Os.11104.1.S1_at--583--5611Chr02:22876533..22876557 (25 bp)
GACAAGCCCCATGAGATGACATTCT
LOC_Os02g37862
Os.11104.1.S1_at--866--4451Chr02:22876466..22876490 (25 bp)
GCCTAGTGTGTTTCTGTACTTCTGA
LOC_Os02g37862
Os.11104.1.S1_at--1041--10771Chr02:22876438..22876462 (25 bp)
TTGTACCCGGGTAGTGAACTCTCCA
LOC_Os02g37862
Os.11104.1.S1_at--209--3591Chr02:22876415..22876439 (25 bp)
CATTTCTGTTGAAGTCTGCCTGTCA
LOC_Os02g37862
Os.11104.1.S1_at--292--451Chr02:22876361..22876385 (25 bp)
ATCTACTTTGGTGGTTCATGGTTAC
LOC_Os02g37862
Os.11104.1.S1_at--1154--7871Chr02:22876342..22876366 (25 bp)
GGTTACCGTACCTACTCAAATGTGC
LOC_Os02g37862
Target Sequence 
GTCATTGCCACATCCACGAAGGTTGACATCTCTGGTGTTAAGGTGGATAAGTTTGATGACAAGTACTTTGCCCGGGACAA
GAAGGCAAAGGCCAAGAAGACCGAGGGTGAACTTTTTGAGACAGAGAAGGAGGCAACCAAGAATCTGCCCGACTTCAAGA
AGGATGACCAGAAGGCTGTGGATGCTGAGTTGATCAAGGCTATCGAGGTTGTCCCAGACCTGAAATCCTATCTTGGTGCC
CGGTTCTCTCTCAGGGACGGCGACAAGCCCCATGAGATGACATTCTAAGTTAGTCGGTACAAGTTTCAAGTTCTGAGGAA
NNCTTTTTNNGCCTAGTGTGTTTCTGTACTTCTGAATTTTGTACCCGGGTAGTGAACTCTCCATTTCTGTTGAAGTCTGC
CTGTCAAATATTATGAGAAGATTAAGAGAAGGATTATCTACTTTGGTGGTTCATGGTTACCGTACCTACTCAAATGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis