Browse Element(s) Details


OsAffx.24621.1.S1_at

Description tigr:9630.m03626
TID=OsAffx.24621.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3785011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37840NANA2+22836926..22839072retrotransposon protein, putative, unclassified
LOC_Os02g37850OsAffx.24621.1.S1_at11/112+22859951..22863677expressed protein
LOC_Os02g37856Os.54111.1.S1_at11/112+22866244..22874372expressed protein
LOC_Os02g37856Os.51012.1.S1_at11/112+22866244..22874372expressed protein
LOC_Os02g37862Os.11104.1.S1_at11/112+22876293..2287828760S ribosomal protein L6, putative, expressed
LOC_Os02g37870Os.23169.1.S1_at11/112+22879235..22882257Brix domain containing protein 2, putative, expressed
LOC_Os02g37880Os.15913.1.S1_a_at11/112+22886643..22891558Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24621.1.S1_at--452--5671Chr02:22860858..22860882 (25 bp)
GACATCACGTCAGTCGTCAAGGTGA
LOC_Os02g37850
OsAffx.24621.1.S1_at--340--8871Chr02:22860880..22860904 (25 bp)
TGATGAACCATTCCCGTAGGCTGTG
LOC_Os02g37850
OsAffx.24621.1.S1_at--379--2531Chr02:22861519..22861540 (22 bp)
AACTTTGAATGCTCTTCTGATGCAG
LOC_Os02g37850
OsAffx.24621.1.S1_at--795--2851Chr02:22863248..22863272 (25 bp)
AAGTCGCCTCGGAAATGCTGCGGTT
LOC_Os02g37850
OsAffx.24621.1.S1_at--667--7891Chr02:22863269..22863293 (25 bp)
GGTTCGGCAGCAGATCCAGTTGAGT
LOC_Os02g37850
OsAffx.24621.1.S1_at--364--6571Chr02:22863297..22863321 (25 bp)
GATTCTTCACGATCTGTGGATCCAG
LOC_Os02g37850
OsAffx.24621.1.S1_at--543--2011Chr02:22863375..22863399 (25 bp)
ACTCAAAAGGCCCTGGATGCTGCTG
LOC_Os02g37850
OsAffx.24621.1.S1_at--750--371Chr02:22863437..22863461 (25 bp)
ATCAACAGCTTACTTGGCCGAGGGC
LOC_Os02g37850
OsAffx.24621.1.S1_at--406--10331Chr02:22863501..22863525 (25 bp)
TTTCAGACACCATCCAGACCAAATG
LOC_Os02g37850
OsAffx.24621.1.S1_at--1058--1372Chr02:22863516..22863540 (25 bp)
AGACCAAATGATCCAGCTCTTGCTG
LOC_Os02g37850
OsAffx.24621.1.S1_at--892--3391Chr02:22863529..22863553 (25 bp)
CAGCTCTTGCTGATCTCATGGAGAA
LOC_Os02g37850
Target Sequence 
GACATCACGTCAGTCGTCAAGGTGATGAACCATTCCCGTAGGCTGTGTGGGAAGTTCAGTGAAATAACAGGCTTAAACTT
TGAATGCTCTTCTGATGCAGTTGAGAGGAAAAGTCGCCTCGGAAATGCTGCGGTTCGGCAGCAGATCCAGTTGAGTGAAG
ATTCTTCACGATCTGTGGATCCAGCAACTCCAGTACAAAAAGAAGAAGGTGTCCCTCAAAGCACACCAACACCACCAACT
CAAAAGGCCCTGGATGCTGCTGCCCCTTGTCCTGGCTCAACCCAAGCTGTTGCAAGCACATCAACAGCTTACTTGGCCGA
GGGCAAGCCGAAGGCATCATCTTCTTCTCCATCTGACTGCTCCTTTCAGACACCATCCAGACCAAATGATCCAGCTCTTG
CTGATCTCATGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis