Browse Element(s) Details


Os.51012.1.S1_at

Description gb:AK060151.1
DB_XREF= gi:32970169
TID=Os.51012.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-310-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-E04, full insert sequence.
FL= gb:AK060151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3785611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37850OsAffx.24621.1.S1_at11/112+22859951..22863677expressed protein
LOC_Os02g37856Os.54111.1.S1_at11/112+22866244..22874372expressed protein
LOC_Os02g37856Os.51012.1.S1_at11/112+22866244..22874372expressed protein
LOC_Os02g37862Os.11104.1.S1_at11/112+22876293..2287828760S ribosomal protein L6, putative, expressed
LOC_Os02g37870Os.23169.1.S1_at11/112+22879235..22882257Brix domain containing protein 2, putative, expressed
LOC_Os02g37880Os.15913.1.S1_a_at11/112+22886643..22891558Protein kinase domain containing protein, expressed
LOC_Os02g37890Os.45796.1.S1_at11/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.2.S1_x_at7/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890OsAffx.3900.1.S1_at5/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.4.S1_x_at4/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51012.1.S1_at--210--5471Chr02:22873724..22873748 (25 bp)
GAACTGGAATTCTCTAGAGCGGCTA
LOC_Os02g37856
Os.51012.1.S1_at--553--5891Chr02:22873708..22873732 (25 bp)
GAGCGGCTAACGACATATTTACTTT
LOC_Os02g37856
Os.51012.1.S1_at--139--91Chr02:22873646..22873670 (25 bp)
ATTCCAATAGCAAAGCTGCTCCCTT
LOC_Os02g37856
Os.51012.1.S1_at--134--3811Chr02:22873628..22873652 (25 bp)
CTCCCTTATGTTTCTTCTGTTGCAA
LOC_Os02g37856
Os.51012.1.S1_at--741--271Chr02:22873564..22873588 (25 bp)
ATAGGATGTCATTGGTCGCCCTGAT
LOC_Os02g37856
Os.51012.1.S1_at--847--6411Chr02:22873542..22873566 (25 bp)
GATCTCTTTCCGGTTGCTCAATGTT
LOC_Os02g37856
Os.51012.1.S1_at--63--3211Chr02:22873524..22873548 (25 bp)
CAATGTTCTTTCCTGAGCTGGTGGT
LOC_Os02g37856
Os.51012.1.S1_at--719--6731Chr02:22873400..22873424 (25 bp)
GTTCTATCAGCAGCAGCACTCGTGG
LOC_Os02g37856
Os.51012.1.S1_at--857--591Chr02:22873279..22873303 (25 bp)
ATGCCGGGACATATCACCTTTGTAA
LOC_Os02g37856
Os.51012.1.S1_at--597--391Chr02:22873267..22873291 (25 bp)
ATCACCTTTGTAACCTTCTCTTTGT
LOC_Os02g37856
Os.51012.1.S1_at--938--4851Chr02:22873213..22873237 (25 bp)
GTTGTTGACTTTATTCCCTAATCGT
LOC_Os02g37856
Target Sequence 
GAACTGGAATTCTCTAGAGCGGCTAACGACATATTTACTTTTTTGTTTCTTTTTAGTAATGCTAATCATAGGTTGTAGAT
TCCAATAGCAAAGCTGCTCCCTTATGTTTCTTCTGTTGCAATAAGCTGGTAGAAGTGCTAGAACTTGCGAAGTAGCACTT
ATAGGATGTCATTGGTCGCCCTGATCTCTTTCCGGTTGCTCAATGTTCTTTCCTGAGCTGGTGGTCAGGCATCAGGAAAG
GGGTCCCTAACAGCTTAGGCGCGGGTTCGATACCGTCGTCGTGCTCGCTGCCTAGTCCATCTGGAAGGAAAGGAACAACA
GGGTGTTCTATCAGCAGCAGCACTCGTGGCCGGACGTAGCTAGGGCAGCGGCAGAGGAGGCTGCCTTGTGGAGATCGGCA
GGTCTGCTCCCGGAGTTGACAATCAGCATTAGGGTCGCAAAATTTATGCCGGGACATATCACCTTTGTAACCTTCTCTTT
GTTTCTTTTTTCTGTCCGGGTTGGTTTGTAAGTTGTTGACTTTATTCCCTAATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis