Browse Element(s) Details


OsAffx.3900.1.S1_at

Description tigr:9632.m02455
TID=OsAffx.3900.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2615011/11hypothetical protein
LOC_Os03g0701011/11retrotransposon protein, putative, unclassified
LOC_Os09g239805/11hypothetical protein
LOC_Os09g043395/11expressed protein
LOC_Os12g198405/11hypothetical protein
LOC_Os12g273105/11Transferase family protein
LOC_Os02g378905/11oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g198945/11transposon protein, putative, Mutator sub-class
LOC_Os04g056205/11hypothetical protein
LOC_Os02g587701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26130OsAffx.425.1.S1_at1/114+15205782..15207483transposon protein, putative, Mariner sub-class
LOC_Os04g26140Os.40360.1.S1_at9/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40855.2.S1_x_at9/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40360.1.S1_x_at6/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40855.4.S1_x_at3/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40855.5.S1_x_at3/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40855.4.S1_at1/114+15214829..15223766hypothetical protein
LOC_Os04g26150OsAffx.3900.1.S1_at11/114+15226251..15227293hypothetical protein
LOC_Os04g26160OsAffx.26158.1.S1_x_at8/114+15231811..15234257hypothetical protein
LOC_Os04g26160OsAffx.26158.2.S1_x_at3/114+15231811..15234257hypothetical protein
LOC_Os04g26160OsAffx.26158.2.S1_at1/114+15231811..15234257hypothetical protein
LOC_Os04g26170OsAffx.26144.1.S1_x_at7/114+15234587..15236391Zinc knuckle family protein
LOC_Os04g26180Os.45902.1.A1_x_at2/114+15239011..15240476hypothetical protein
LOC_Os04g26180Os.10263.1.S1_at1/114+15239011..15240476hypothetical protein
LOC_Os04g26180OsAffx.21755.1.S1_x_at1/114+15239011..15240476hypothetical protein
LOC_Os04g26180OsAffx.727.1.S1_x_at1/114+15239011..15240476hypothetical protein
LOC_Os04g26190Os.9665.1.S1_at6/114+15244356..15245046Pollen allergen family protein
LOC_Os04g26200OsAffx.26159.1.S1_at10/114+15247619..15248553hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016491molecular_functionoxidoreductase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0016740molecular_functiontransferase activity
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3900.1.S1_at--862--59923Chr10:16112525..16112549 (25 bp)
GAGAGAAGGTTATCTTTCCGACTGT
NONE
OsAffx.3900.1.S1_at--828--59523Chr10:16112527..16112551 (25 bp)
GAGAAGGTTATCTTTCCGACTGTGA
NONE
OsAffx.3900.1.S1_at--170--14723Chr10:16112528..16112552 (25 bp)
AGAAGGTTATCTTTCCGACTGTGAA
NONE
OsAffx.3900.1.S1_at--736--53126Chr10:16112529..16112553 (25 bp)
GAAGGTTATCTTTCCGACTGTGAAG
NONE
OsAffx.3900.1.S1_at--1101--28923Chr10:16112530..16112554 (25 bp)
AAGGTTATCTTTCCGACTGTGAAGG
NONE
OsAffx.3900.1.S1_at--1123--78523Chr10:16112532..16112556 (25 bp)
GGTTATCTTTCCGACTGTGAAGGTC
NONE
OsAffx.3900.1.S1_at--844--67969Chr11:7043380..7043403 (24 bp)
GTTATCTTTCCGACTGTGAAGGTCT
NONE
OsAffx.3900.1.S1_at--1099--100767Chr11:7043381..7043405 (25 bp)
TATCTTTCCGACTGTGAAGGTCTCA
NONE
OsAffx.3900.1.S1_at--878--4166Chr11:7043382..7043406 (25 bp)
ATCTTTCCGACTGTGAAGGTCTCAG
NONE
OsAffx.3900.1.S1_at--480--95566Chr11:7043383..7043407 (25 bp)
TCTTTCCGACTGTGAAGGTCTCAGG
NONE
OsAffx.3900.1.S1_at--798--36795Chr12:6906118..6906137 (20 bp)
CTTTCCGACTGTGAAGGTCTCAGGG
NONE
Target Sequence 
GAGAGAAGGTTATCTTTCCGACTGTGAAGGTCTCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis