Browse Element(s) Details


OsAffx.26158.2.S1_at

Description tigr:9632.m02368
TID=OsAffx.26158.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2529011/11hypothetical protein
LOC_Os04g261601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25260OsAffx.3889.1.S1_at11/114+14574081..14574491hypothetical protein
LOC_Os04g25270OsAffx.3890.1.S1_at10/114+14580445..14581313hypothetical protein
LOC_Os04g25280Os.46012.2.S1_x_at2/114+14584065..14589755retrotransposon protein, putative, unclassified
LOC_Os04g25280Os.27088.1.A1_x_at1/114+14584065..14589755retrotransposon protein, putative, unclassified
LOC_Os04g25290OsAffx.26158.2.S1_x_at11/114+14598257..14598663hypothetical protein
LOC_Os04g25290OsAffx.26158.2.S1_at11/114+14598257..14598663hypothetical protein
LOC_Os04g25290OsAffx.26158.1.S1_x_at5/114+14598257..14598663hypothetical protein
LOC_Os04g25300OsAffx.26144.1.S1_x_at8/114+14599255..14601861Zinc knuckle family protein
LOC_Os04g25310OsAffx.26144.3.S1_at11/114+14604842..14605481hypothetical protein
LOC_Os04g25310OsAffx.26144.3.S1_s_at11/114+14604842..14605481hypothetical protein
LOC_Os04g25320OsAffx.3891.1.S1_at11/114+14616090..14616530hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26158.2.S1_at--1048--4794Chr10:2799514..2799538 (25 bp)
GCTCGAGCTCCAGTAGGAGCACAAC
NONE
OsAffx.26158.2.S1_at--363--9231Chr04:14598337..14598361 (25 bp)
TCCAGTAGGAGCACAACACGGGCGG
LOC_Os04g25290
OsAffx.26158.2.S1_at--716--2171Chr04:14598352..14598376 (25 bp)
ACACGGGCGGCGACGGAAATATCCA
LOC_Os04g25290
OsAffx.26158.2.S1_at--456--8352Chr06:17806159..17806342 (25 bp)
GGCGGCGACGGAAATATCCAGGCAA
NONE
OsAffx.26158.2.S1_at--705--4591Chr04:14598361..14598382 (22 bp)
GCGACGGAAATATCCAGGCAAGAAT
LOC_Os04g25290
OsAffx.26158.2.S1_at--393--3952Chr06:17806326..17806430 (25 bp)
CGGAAATATCCAGGCAAGAATGGTG
NONE
OsAffx.26158.2.S1_at--701--1052Chr06:17806459..17806483 (25 bp)
AGGGACAACGCCGTATTTGAAGCAG
NONE
OsAffx.26158.2.S1_at--419--8152Chr06:17806461..17806485 (25 bp)
GGACAACGCCGTATTTGAAGCAGGT
NONE
OsAffx.26158.2.S1_at--1045--5612Chr06:17806462..17806486 (25 bp)
GACAACGCCGTATTTGAAGCAGGTT
NONE
OsAffx.26158.2.S1_at--757--3252Chr06:17806464..17806488 (25 bp)
CAACGCCGTATTTGAAGCAGGTTTT
NONE
OsAffx.26158.2.S1_at--254--2512Chr06:17806465..17806489 (25 bp)
AACGCCGTATTTGAAGCAGGTTTTG
NONE
Target Sequence 
GCTCGAGCTCCAGTAGGAGCACAACACGGGCGGCGACGGAAATATCCAGGCAAGAATGGTGGATGCAAATTATGGCAGTG
GTATGAACCAGGGACAACGCCGTATTTGAAGCAGGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26158.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis