Browse Element(s) Details


OsAffx.3891.1.S1_at

Description tigr:9632.m02371
TID=OsAffx.3891.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2532011/11hypothetical protein
LOC_Os04g260907/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25290OsAffx.26158.2.S1_x_at11/114+14598257..14598663hypothetical protein
LOC_Os04g25290OsAffx.26158.2.S1_at11/114+14598257..14598663hypothetical protein
LOC_Os04g25290OsAffx.26158.1.S1_x_at5/114+14598257..14598663hypothetical protein
LOC_Os04g25300OsAffx.26144.1.S1_x_at8/114+14599255..14601861Zinc knuckle family protein
LOC_Os04g25310OsAffx.26144.3.S1_at11/114+14604842..14605481hypothetical protein
LOC_Os04g25310OsAffx.26144.3.S1_s_at11/114+14604842..14605481hypothetical protein
LOC_Os04g25320OsAffx.3891.1.S1_at11/114+14616090..14616530hypothetical protein
LOC_Os04g25330Os.35344.3.S1_x_at9/114+14629749..14632498transposon protein, putative, Mutator sub-class
LOC_Os04g25330Os.35344.18.S1_x_at7/114+14629749..14632498transposon protein, putative, Mutator sub-class
LOC_Os04g25330OsAffx.22940.5.S1_x_at3/114+14629749..14632498transposon protein, putative, Mutator sub-class
LOC_Os04g25339NANA4+14639210..14639399NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3891.1.S1_at--613--8291Chr04:14616144..14616168 (25 bp)
GGCTTTGAGGCCTCCCGGTGCAGTC
LOC_Os04g25320
OsAffx.3891.1.S1_at--668--4852Chr04:14616185..14616209 (25 bp)
GCTACCGGCCGCGACAGCATTGAAG
LOC_Os04g25320
OsAffx.3891.1.S1_at--677--4592Chr04:14616195..14616219 (25 bp)
GCGACAGCATTGAAGCCACCCACTG
LOC_Os04g25320
OsAffx.3891.1.S1_at--146--4472Chr04:14616232..14616256 (25 bp)
GCCTCTTCACCATGCTGACAATTGT
LOC_Os04g25320
OsAffx.3891.1.S1_at--614--8952Chr04:14616247..14616271 (25 bp)
TGACAATTGTCGCTGGCCTCGACAG
LOC_Os04g25320
OsAffx.3891.1.S1_at--780--5652Chr04:14616267..14616291 (25 bp)
GACAGTCTCCAACTGCCACGGGTTG
LOC_Os04g25320
OsAffx.3891.1.S1_at--1131--9192Chr04:14616280..14616304 (25 bp)
TGCCACGGGTTGTTCCGACCAGATC
LOC_Os04g25320
OsAffx.3891.1.S1_at--547--5851Chr04:14616296..14616320 (25 bp)
GACCAGATCCGACGCAATAATGCTA
LOC_Os04g25320
OsAffx.3891.1.S1_at--1046--3171Chr04:14616310..14616334 (25 bp)
CAATAATGCTAGATCCACACGTGGG
LOC_Os04g25320
OsAffx.3891.1.S1_at--813--1732Chr04:14616390..14616414 (25 bp)
ACCATCCTCATGCTAAGGCAGGTCG
LOC_Os04g25320
OsAffx.3891.1.S1_at--674--4671Chr04:14616407..14616431 (25 bp)
GCAGGTCGCCACTGGGTACAGGCCT
LOC_Os04g25320
Target Sequence 
GGCTTTGAGGCCTCCCGGTGCAGTCTCTGCGCGAGGGCCCCGCTACCGGCCGCGACAGCATTGAAGCCACCCACTGCCGT
CACTCATGGCCTCTTCACCATGCTGACAATTGTCGCTGGCCTCGACAGTCTCCAACTGCCACGGGTTGTTCCGACCAGAT
CCGACGCAATAATGCTAGATCCACACGTGGGGTGCCCGGATCCGGCCACACCGGCACCGGATCCACTGCTCTCCGTGCGC
CGAGTCACCATCCTCATGCTAAGGCAGGTCGCCACTGGGTACAGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis