Browse Element(s) Details


Os.15913.1.S1_a_at

Description gb:AK060750.1
DB_XREF= gi:32970768
TID=Os.15913.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099K09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-032-G02, full insert sequence.
FL= gb:AK060750.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3788011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37850OsAffx.24621.1.S1_at11/112+22859951..22863677expressed protein
LOC_Os02g37856Os.54111.1.S1_at11/112+22866244..22874372expressed protein
LOC_Os02g37856Os.51012.1.S1_at11/112+22866244..22874372expressed protein
LOC_Os02g37862Os.11104.1.S1_at11/112+22876293..2287828760S ribosomal protein L6, putative, expressed
LOC_Os02g37870Os.23169.1.S1_at11/112+22879235..22882257Brix domain containing protein 2, putative, expressed
LOC_Os02g37880Os.15913.1.S1_a_at11/112+22886643..22891558Protein kinase domain containing protein, expressed
LOC_Os02g37890Os.45796.1.S1_at11/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.2.S1_x_at7/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890OsAffx.3900.1.S1_at5/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.4.S1_x_at4/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37900Os.40360.1.S1_x_at1/112+22901770..22902489hypothetical protein
LOC_Os02g37910Os.18483.1.S1_at11/112+22905097..22909797phosphodiesterase/alkaline phosphatase D, putative, expressed
LOC_Os02g37920Os.23276.1.S1_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37920Os.23276.1.S2_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15913.1.S1_a_at--781--2371Chr02:22890846..22890870 (25 bp)
AAACTCATTACCTAGCTCTGAAGCC
LOC_Os02g37880
Os.15913.1.S1_a_at--954--6831Chr02:22891001..22891025 (25 bp)
GTTTCGGGCCAGATAGTTTCAGGAC
LOC_Os02g37880
Os.15913.1.S1_a_at--514--6091Chr02:22891035..22891059 (25 bp)
GAGTACTGCCGCTCAGATCAACAGG
LOC_Os02g37880
Os.15913.1.S1_a_at--446--7651Chr02:22891072..22891096 (25 bp)
GGGAGTTCCTCCCAGAGATTCAGCT
LOC_Os02g37880
Os.15913.1.S1_a_at--897--2591Chr02:22891121..22891145 (25 bp)
AACCATCAGGGTGGGCCGGATTCTA
LOC_Os02g37880
Os.15913.1.S1_a_at--768--7911Chr02:22891138..22891162 (25 bp)
GGATTCTAACTTCTCGTGGCCATTC
LOC_Os02g37880
Os.15913.1.S1_a_at--629--111Chr02:22891174..22891198 (25 bp)
ATTCTCATTCCGAACTACTAGCTGC
LOC_Os02g37880
Os.15913.1.S1_a_at--742--9891Chr02:22891189..22891213 (25 bp)
TACTAGCTGCCCTATGCTGCAATTG
LOC_Os02g37880
Os.15913.1.S1_a_at--566--31Chr02:22891286..22891310 (25 bp)
ATTGTTCATAGTTGGTCAAGCCGAC
LOC_Os02g37880
Os.15913.1.S1_a_at--397--10031Chr02:22891312..22891336 (25 bp)
TAGACATTGGTGTTCTGCGGCCGTT
LOC_Os02g37880
Os.15913.1.S1_a_at--958--4491Chr02:22891331..22891355 (25 bp)
GCCGTTTTGCCAATACCTTGTCAAT
LOC_Os02g37880
Target Sequence 
AAACTCATTACCTAGCTCTGAAGCCAAAACATGGCAGGCATTCCCTGACCCCAAATCTCAACCTGCTCAGGTCAGACCAA
AGGTTGATCATTCTACCAATGGAGCGCAAAACCTGGCAAGGAACGCAAACTCAAGACAATCACCAGATGGTTGGGGTTTC
GGGCCAGATAGTTTCAGGACATCACCAGGGAGTACTGCCGCTCAGATCAACAGGCCCACTGCTCAGGGGAGTTCCTCCCA
GAGATTCAGCTCAGGAGCAGCGAAGAAAGTGGAGCAACCATCAGGGTGGGCCGGATTCTAACTTCTCGTGGCCATTCGGC
AATTGTCCATTCTCATTCCGAACTACTAGCTGCCCTATGCTGCAATTGCGAGTTGAAGATTGATGAGTGTGGCTATGGTT
CTTGCCCTGGCGTAGGGTGCCATGATTGGTTATTTTCAACATTGTTCATAGTTGGTCAAGCCGACCTAGACATTGGTGTT
CTGCGGCCGTTTTGCCAATACCTTGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15913.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis