Browse Element(s) Details


Os.23276.1.S2_at

Description gb:AK102601.1
DB_XREF= gi:32987810
TID=Os.23276.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033098M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098M13, full insert sequence.
FL= gb:AK073685.1 gb:AK102601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3792011/11DNA mismatch repair protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37880Os.15913.1.S1_a_at11/112+22886643..22891558Protein kinase domain containing protein, expressed
LOC_Os02g37890Os.45796.1.S1_at11/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.2.S1_x_at7/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890OsAffx.3900.1.S1_at5/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.4.S1_x_at4/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37900Os.40360.1.S1_x_at1/112+22901770..22902489hypothetical protein
LOC_Os02g37910Os.18483.1.S1_at11/112+22905097..22909797phosphodiesterase/alkaline phosphatase D, putative, expressed
LOC_Os02g37920Os.23276.1.S1_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37920Os.23276.1.S2_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37930Os.11900.1.S1_at11/112+22921729..22924608Hypoxia induced protein conserved region containing protein, expressed
LOC_Os02g37940Os.9038.1.S1_at10/112+22925110..22927625expressed protein
LOC_Os02g37950Os.53748.2.S1_x_at11/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.53748.1.S1_at10/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.2.S1_x_at4/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.3.S1_s_at1/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37960Os.54977.1.S1_at11/112+22935412..22937076expressed protein
LOC_Os02g37960Os.54977.1.S2_at11/112+22935412..22937076expressed protein
LOC_Os02g37970Os.55236.1.S1_at11/112+22936995..22937952senescence-associated protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0005524molecular_functionATP binding
GO:0030674molecular_functionprotein binding, bridging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23276.1.S2_at--1137--9131Chr02:22912508..22912532 (25 bp)
TGCGCTGCTACCATTCCAAGGAAAT
LOC_Os02g37920
Os.23276.1.S2_at--724--5591Chr02:22912488..22912512 (25 bp)
GAAATTAGGCGCTCCATGGCCAACA
LOC_Os02g37920
Os.23276.1.S2_at--559--3491Chr02:22912474..22912498 (25 bp)
CATGGCCAACATTCCTTGATGTGTA
LOC_Os02g37920
Os.23276.1.S2_at--789--1751Chr02:22912431..22912455 (25 bp)
ACCTGTTTGAGAGCCTGTGTGACCT
LOC_Os02g37920
Os.23276.1.S2_at--642--7471Chr02:22912415..22912439 (25 bp)
GTGTGACCTATTCGTGTACTAACTT
LOC_Os02g37920
Os.23276.1.S2_at--493--5591Chr02:22912355..22912379 (25 bp)
GAGAACCTTGTTTCTAAGCCTTCGA
LOC_Os02g37920
Os.23276.1.S2_at--906--9351Chr02:22912334..22912358 (25 bp)
TCGAAATGGGATGCATCTCCTTGCC
LOC_Os02g37920
Os.23276.1.S2_at--928--10011Chr02:22912306..22912330 (25 bp)
TAGAATCCTTTTGCTCGGAGACTAA
LOC_Os02g37920
Os.23276.1.S2_at--742--5611Chr02:22912020..22912044 (25 bp)
GACACTTGCTCTCAGGGTATGGATT
LOC_Os02g37920
Os.23276.1.S2_at--126--6931Chr02:22912004..22912028 (25 bp)
GTATGGATTACCCTGTGCTATTTAT
LOC_Os02g37920
Os.23276.1.S2_at--1075--151Chr02:22911979..22912003 (25 bp)
ATTATCTTTTTGAGCCTGGAACGGC
LOC_Os02g37920
Target Sequence 
TGCGCTGCTACCATTCCAAGGAAATTAGGCGCTCCATGGCCAACATTCCTTGATGTGTATAGATGCCAGTCTCTCCCACC
TGTTTGAGAGCCTGTGTGACCTATTCGTGTACTAACTTACATANGTGATACATACATGACATGCGTGATAGTGGAGAACC
TTGTTTCTAAGCCTTCGAAATGGGATGCATCTCCTTGCCCNCTAGAATCCTTTTGCTCGGAGACTAATGCCGGAAGCGAA
ATACNCCNACNCCTTTGCNANAGGATGACGAGCAACNAAGGTGNACATCANGGTTATCNANGGGAAAGCTATCTGGGGAA
ACATAAACTGATGCANTGTGCTTACCTTTATTGTGTGGTTAAAATCCANGACNNAGATGTAACTTAGGTACTTGTGTTGA
AAATGCCTCGAGTTTNTGAGTTGTATGCAACNNAAGCTCTTGGCTGTATTTANGTTGCANGGCTTGCANTTTTTAACNCC
TTACCNTTATCTATAAACNNGTAGACACTTGCTCTCAGGGTATGGATTACCCTGTGCTATTTATATTATCTTTTTGAGCC
TGGAACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23276.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis