Browse Element(s) Details


Os.53748.2.S1_x_at

Description gb:AK103224.1
DB_XREF= gi:32988433
TID=Os.53748.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033123A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123A06, full insert sequence.
FL= gb:AK103224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3795011/11calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g443801/11Beige/BEACH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37910Os.18483.1.S1_at11/112+22905097..22909797phosphodiesterase/alkaline phosphatase D, putative, expressed
LOC_Os02g37920Os.23276.1.S1_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37920Os.23276.1.S2_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37930Os.11900.1.S1_at11/112+22921729..22924608Hypoxia induced protein conserved region containing protein, expressed
LOC_Os02g37940Os.9038.1.S1_at10/112+22925110..22927625expressed protein
LOC_Os02g37950Os.53748.2.S1_x_at11/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.53748.1.S1_at10/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.2.S1_x_at4/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.3.S1_s_at1/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37960Os.54977.1.S1_at11/112+22935412..22937076expressed protein
LOC_Os02g37960Os.54977.1.S2_at11/112+22935412..22937076expressed protein
LOC_Os02g37970Os.55236.1.S1_at11/112+22936995..22937952senescence-associated protein, putative, expressed
LOC_Os02g37980OsAffx.2903.1.S1_at9/112+22944428..22948969expressed protein
LOC_Os02g37980OsAffx.1396.1.S1_x_at1/112+22944428..22948969expressed protein
LOC_Os02g37990OsAffx.24623.1.S1_x_at7/112+22949717..22950559Phenylethylamine oxidase precursor, putative
LOC_Os02g37990OsAffx.24623.1.S1_at6/112+22949717..22950559Phenylethylamine oxidase precursor, putative
LOC_Os02g38000Os.20341.2.S1_at1/112+22951916..22956828retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g38010NANA2+22957124..22960177Copper amine oxidase, N3 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0000166molecular_functionnucleotide binding
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53748.2.S1_x_at--487--6191Chr02:22931895..22931919 (25 bp)
GAGGAACATTGTCACTTAGCTACAC
LOC_Os02g37950
Os.53748.2.S1_x_at--1038--10451Chr02:22931910..22931934 (25 bp)
TTAGCTACACCAGCCATCGATGAGT
LOC_Os02g37950
Os.53748.2.S1_x_at--117--6131Chr02:22931931..22931955 (25 bp)
GAGTGTAATACAGCCACTCCTGCTC
LOC_Os02g37950
Os.53748.2.S1_x_at--927--9091Chr02:22931951..22931975 (25 bp)
TGCTCCAGACTCTGTAATTCCACAG
LOC_Os02g37950
Os.53748.2.S1_x_at--328--731Chr02:22932070..22932094 (25 bp)
ATGATTCCGACAATGTGCTCTCATC
LOC_Os02g37950
Os.53748.2.S1_x_at--952--4531Chr02:22932097..22932121 (25 bp)
GCCCGTCAGCTCAGGCACTGGAGGA
LOC_Os02g37950
Os.53748.2.S1_x_at--755--9811Chr02:22932258..22932282 (25 bp)
TAACTATAATGGTGTCCCCTCATCT
LOC_Os02g37950
Os.53748.2.S1_x_at--1095--5631Chr02:22932291..22932315 (25 bp)
GACAGGCGATTCTGATTTCACCCCT
LOC_Os02g37950
Os.53748.2.S1_x_at--532--4171Chr02:22932312..22932336 (25 bp)
CCCTCATCATGTCACCTTTGTATAG
LOC_Os02g37950
Os.53748.2.S1_x_at--847--6872Chr02:22932413..22932437 (25 bp)
GTATTCTGCTTCATCTCCAATGTAA
LOC_Os02g37950
Os.53748.2.S1_x_at--677--6893Chr02:22932466..22932490 (25 bp)
GTATACTGTATACTACCTCCATCCC
LOC_Os02g37950
Target Sequence 
GAGGAACATTGTCACTTAGCTACACCAGCCATCGATGAGTGTAATACAGCCACTCCTGCTCCAGACTCTGTAATTCCACA
GCAGAACACTGATTTTGATCAAGATGGACATCTGGAAAATCCTAATGAAATGGACCAGATTGAACTGATGGTGGAACCTA
TATGTGTGGATCACAATGATTCCGACAATGTGCTCTCATCCAGCCCGTCAGCTCAGGCACTGGAGGAGAATTGTGAAGTA
GCAAAGGCAGTCAATGGAAATGTCGATCCAACCACCCAAGTTACTGGCTCATCTACCCCACAACAGGACACAGATGTCAA
ACTAGTTGCTGAACAGGAAAACCCAGGCACAACAGAGGGCAACTAACTATAATGGTGTCCCCTCATCTGCAGAGGAGACA
GGCGATTCTGATTTCACCCCTCATCATGTCACCTTTGTATAGTGACTAGTTATGTTTGCCATGTTGATTTTTTTGACATT
AGAAGTTCTTTTTTTTGTATTTATATTCATTGATGGTAGTATTCTGCTTCATCTCCAATGTAATATGGGAATGGATATAT
TAAGCCCTAGTGTATACTGTATACTACCTCCATCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53748.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis