Browse Element(s) Details


Os.54977.1.S1_at

Description gb:AK108162.1
DB_XREF= gi:32993371
TID=Os.54977.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-H01, full insert sequence.
FL= gb:AK108162.1 gb:AK107229.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3796011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37920Os.23276.1.S1_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37920Os.23276.1.S2_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37930Os.11900.1.S1_at11/112+22921729..22924608Hypoxia induced protein conserved region containing protein, expressed
LOC_Os02g37940Os.9038.1.S1_at10/112+22925110..22927625expressed protein
LOC_Os02g37950Os.53748.2.S1_x_at11/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.53748.1.S1_at10/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.2.S1_x_at4/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.3.S1_s_at1/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37960Os.54977.1.S1_at11/112+22935412..22937076expressed protein
LOC_Os02g37960Os.54977.1.S2_at11/112+22935412..22937076expressed protein
LOC_Os02g37970Os.55236.1.S1_at11/112+22936995..22937952senescence-associated protein, putative, expressed
LOC_Os02g37980OsAffx.2903.1.S1_at9/112+22944428..22948969expressed protein
LOC_Os02g37980OsAffx.1396.1.S1_x_at1/112+22944428..22948969expressed protein
LOC_Os02g37990OsAffx.24623.1.S1_x_at7/112+22949717..22950559Phenylethylamine oxidase precursor, putative
LOC_Os02g37990OsAffx.24623.1.S1_at6/112+22949717..22950559Phenylethylamine oxidase precursor, putative
LOC_Os02g38000Os.20341.2.S1_at1/112+22951916..22956828retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g38010NANA2+22957124..22960177Copper amine oxidase, N3 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54977.1.S1_at--297--7171Chr02:22935887..22935911 (25 bp)
GTCTCGCGCGCGGAGAAGCCTAGAA
LOC_Os02g37960
Os.54977.1.S1_at--732--1631Chr02:22935999..22936023 (25 bp)
AGCGTCCTCTGGCATCTTCAGCAAG
LOC_Os02g37960
Os.54977.1.S1_at--1124--7551Chr02:22936043..22936067 (25 bp)
GGGCCATCTCGACGCAGAGCGGTGG
LOC_Os02g37960
Os.54977.1.S1_at--153--8131Chr02:22936141..22936165 (25 bp)
GGACTTGGATGAGGCTTCACCAGCT
LOC_Os02g37960
Os.54977.1.S1_at--137--6211Chr02:22936151..22936175 (25 bp)
GAGGCTTCACCAGCTTGGGAGAACA
LOC_Os02g37960
Os.54977.1.S1_at--99--10831Chr02:22936165..22936189 (25 bp)
TTGGGAGAACAACGGCGGCCACACT
LOC_Os02g37960
Os.54977.1.S1_at--433--8451Chr02:22936181..22936205 (25 bp)
GGCCACACTAGTCGGCGCTACAACA
LOC_Os02g37960
Os.54977.1.S1_at--309--6111Chr02:22936228..22936252 (25 bp)
GAGTCCTCACCAAGTGGGTCCTGTG
LOC_Os02g37960
Os.54977.1.S1_at--765--3731Chr02:22936233..22936257 (25 bp)
CTCACCAAGTGGGTCCTGTGCCAGA
LOC_Os02g37960
Os.54977.1.S1_at--330--10351Chr02:22936260..22936284 (25 bp)
TTTTTGCGCGAGGTGTTCGTTCCTT
LOC_Os02g37960
Os.54977.1.S1_at--1039--7411Chr02:22936272..22936296 (25 bp)
GTGTTCGTTCCTTTGGCTGTGTTTA
LOC_Os02g37960
Target Sequence 
GTCTCGCGCGCGGAGAAGCCTAGAAGGCCGGCGGTCGAGGAGCTCCCCCGGCGACGCGGCGATGAGCATCGAGCGGAGCA
GCGGGCGGGCCTTCTCGACACGGAGCAGCGACAGCGTCCTCTGGCATCTTCAGCAAGCGCCGAGCGGAGCAGCAAGGGGC
CATCTCGACGCAGAGCGGTGGCGGTCCGGAACTCCNTCGTTCCGAGCGGTGACGGTGACGGCCGCATCAGCGCCGCCGGA
TTTTCTCAGGTGGGGGACTTGGATGAGGCTTCACCAGCTTGGGAGAACAACGGCGGCCACACTAGTCGGCGCTACAACAT
CTCCCAACTCTTCTCCTCACCGAGTCCTCACCAAGTGGGTCCTGTGCCAGAGTTTTTTTGCGCGAGGTGTTCGTTCCTTT
GGCTGTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis