Browse Element(s) Details


OsAffx.2903.1.S1_at

Description tigr:9630.m03642
TID=OsAffx.2903.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g379809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37930Os.11900.1.S1_at11/112+22921729..22924608Hypoxia induced protein conserved region containing protein, expressed
LOC_Os02g37940Os.9038.1.S1_at10/112+22925110..22927625expressed protein
LOC_Os02g37950Os.53748.2.S1_x_at11/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.53748.1.S1_at10/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.2.S1_x_at4/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.3.S1_s_at1/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37960Os.54977.1.S1_at11/112+22935412..22937076expressed protein
LOC_Os02g37960Os.54977.1.S2_at11/112+22935412..22937076expressed protein
LOC_Os02g37970Os.55236.1.S1_at11/112+22936995..22937952senescence-associated protein, putative, expressed
LOC_Os02g37980OsAffx.2903.1.S1_at9/112+22944428..22948969expressed protein
LOC_Os02g37980OsAffx.1396.1.S1_x_at1/112+22944428..22948969expressed protein
LOC_Os02g37990OsAffx.24623.1.S1_x_at7/112+22949717..22950559Phenylethylamine oxidase precursor, putative
LOC_Os02g37990OsAffx.24623.1.S1_at6/112+22949717..22950559Phenylethylamine oxidase precursor, putative
LOC_Os02g38000Os.20341.2.S1_at1/112+22951916..22956828retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g38010NANA2+22957124..22960177Copper amine oxidase, N3 domain containing protein
LOC_Os02g38020Os.9506.1.S1_a_at11/112+22966020..22969422Phosphate transporter family protein, expressed
LOC_Os02g38040Os.52931.1.S1_at11/112+22972961..22975631Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2903.1.S1_at--433--4151NONE
CGCGAGAGGCGTGGTATAATATATC
NONE
OsAffx.2903.1.S1_at--89--10391Chr02:22946285..22946309 (25 bp)
TTTTCTTTTGCTTTATCCCTTCTGT
LOC_Os02g37980
OsAffx.2903.1.S1_at--461--4891Chr02:22946276..22946300 (25 bp)
GCTTTATCCCTTCTGTGTGCTGTAT
LOC_Os02g37980
OsAffx.2903.1.S1_at--494--3891Chr02:22946264..22946288 (25 bp)
CTGTGTGCTGTATTCCTCCACAGGG
LOC_Os02g37980
OsAffx.2903.1.S1_at--1097--7591Chr02:22946241..22946265 (25 bp)
GGGCAGACGGCTACCATTACTTTAT
LOC_Os02g37980
OsAffx.2903.1.S1_at--998--5731Chr02:22946236..22946260 (25 bp)
GACGGCTACCATTACTTTATTCCAA
LOC_Os02g37980
OsAffx.2903.1.S1_at--1031--4851Chr02:22946232..22946256 (25 bp)
GCTACCATTACTTTATTCCAATTGG
LOC_Os02g37980
OsAffx.2903.1.S1_at--1045--7571NONE
GGGTAGGCCAGATCAAACAGAACGT
NONE
OsAffx.2903.1.S1_at--333--2411Chr02:22945353..22945377 (25 bp)
AAACAGAACGTTACGAGGCCAACAG
LOC_Os02g37980
OsAffx.2903.1.S1_at--1017--6771Chr02:22945344..22945368 (25 bp)
GTTACGAGGCCAACAGATCGCCTAA
LOC_Os02g37980
OsAffx.2903.1.S1_at--1097--6371Chr02:22945329..22945353 (25 bp)
GATCGCCTAAACAGGCTACCAAAAG
LOC_Os02g37980
Target Sequence 
CGCGAGAGGCGTGGTATAATATATCTGATGTTGATTATATTTATTTTCTTTTGCTTTATCCCTTCTGTGTGCTGTATTCC
TCCACAGGGGCAGACGGCTACCATTACTTTATTCCAATTGGGGTAGGCCAGATCAAACAGAACGTTACGAGGCCAACAGA
TCGCCTAAACAGGCTACCAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis