Browse Element(s) Details


Os.20341.2.S1_at

Description gb:AK067912.1
DB_XREF= gi:32977930
TID=Os.20341.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128F10, full insert sequence.
FL= gb:AK067912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5204011/11Serine carboxypeptidase family protein, expressed
LOC_Os03g477021/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g380001/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51990OsAffx.13462.1.S1_at11/113+29786820..29788818ACT domain containing protein, expressed
LOC_Os03g52000Os.9232.1.S1_x_at11/113+29789048..29793799BSD domain containing protein, expressed
LOC_Os03g52010Os.53266.1.S1_at11/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.3.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.1.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52020OsAffx.25685.1.S1_at11/113+29803099..29803622expressed protein
LOC_Os03g52030OsAffx.13463.1.S1_at11/113+29805395..29805838hypothetical protein
LOC_Os03g52040Os.20341.1.S1_s_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.20341.2.S1_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.25253.1.S1_at9/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.10728.1.S1_at1/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.15597.1.S1_a_at11/113+29821645..29826326Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.20341.1.S1_s_at1/113+29821645..29826326Serine carboxypeptidase family protein, expressed
LOC_Os03g52080OsAffx.3580.1.S1_at10/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.52150.1.S1_at2/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.20341.1.S1_s_at1/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.52150.1.S1_x_at1/113+29831505..29838042Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20341.2.S1_at--948--9354Chr03:29814248..29814272 (25 bp)
TCGCAAGCAGCATCAAGTATCATTT
LOC_Os03g52040
Os.20341.2.S1_at--1149--10151Chr03:29814265..29814289 (25 bp)
TATCATTTTGACCTCACCACAGGAG
LOC_Os03g52040
Os.20341.2.S1_at--812--1011Chr03:29814288..29814312 (25 bp)
AGGTTACCGGGCACTTGTGTTCAGG
LOC_Os03g52040
Os.20341.2.S1_at--734--2451Chr03:29814328..29814352 (25 bp)
AAAATTCATTTATCTGCTTCCTGCA
LOC_Os03g52040
Os.20341.2.S1_at--1148--8431Chr03:29814506..29814634 (25 bp)
GGCCAGGCTGCAGGATTTACAATTT
LOC_Os03g52040
Os.20341.2.S1_at--1099--7731Chr03:29814792..29814816 (25 bp)
GGTGGTGGCCATACCTCTATAGAAA
LOC_Os03g52040
Os.20341.2.S1_at--894--7391Chr03:29814872..29814896 (25 bp)
GTGATGTTCACCTGCTTTGACCCAA
LOC_Os03g52040
Os.20341.2.S1_at--984--5471Chr03:29814933..29814957 (25 bp)
GAACTACTTTATCTCCCATGTTTTC
LOC_Os03g52040
Os.20341.2.S1_at--523--7011Chr03:29815060..29815084 (25 bp)
GTACTAGCTCGGGTTGCTACTACAA
LOC_Os03g52040
Os.20341.2.S1_at--840--2731Chr03:29815104..29815128 (25 bp)
AATGCACCCGGTCAAACCACTTTGA
LOC_Os03g52040
Os.20341.2.S1_at--223--8931Chr03:29815126..29815150 (25 bp)
TGACCACACGAGGTTTTTACCCACT
LOC_Os03g52040
Target Sequence 
TCGCAAGCAGCATCAAGTATCATTTTGACCTCACCACAGGAGGTTACCGGGCACTTGTGTTCAGGTGAAATCATCAGAGG
AAAATTCATTTATCTGCTTCCTGCAGGCATGGATAAGATCCTTGAACTTCTCCATAGTTGATGAGTGGAGAGCATGGCAT
GTGGATGGCCAGGCTGCAGGATTTACAATTTTGTACGCCAACAACTTGACCTTTGCCACAGTAAAGGGTGGTGGCCATAC
CTCTATAGAAACCAATCCTAAACAAGGTTTTGCCATGGGCAAACGTTGGCTAGATAATAANGCCTCTGTGATGTTCACCT
GCTTTGACCCAACCTGTATACNCGTGCAACTGGTATTGTTTGTATGAAGAACTACTTTATCTCCCATGTTTTCCAACAAC
GAATAGAAGACAAGATAAATACTCCGCCAAATAGAGGGTCCAGTACTGACCAAATTGAAAAATGGAGAGAAAAAAAATCC
TGATCAGTTGTAGAAGTACTAGCTCGGGTTGCTACTACAACTTTGGGATGCAAAATGCAAATGCACCCGGTCAAACCACT
TTGACCACACGAGGTTTTTACCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20341.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis