Browse Element(s) Details


Os.25253.1.S1_at

Description gb:CA759139
DB_XREF= gi:25803171
DB_XREF=BR060013A20E08.ab1
CLONE=BR060013A20E08.ab1
TID=Os.25253.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.25253 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_198467.1 (A.thaliana) serine carboxypeptidase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g520409/11Serine carboxypeptidase family protein, expressed
LOC_Os06g281941/11phosphoglucomutase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51990OsAffx.13462.1.S1_at11/113+29786820..29788818ACT domain containing protein, expressed
LOC_Os03g52000Os.9232.1.S1_x_at11/113+29789048..29793799BSD domain containing protein, expressed
LOC_Os03g52010Os.53266.1.S1_at11/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.3.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.1.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52020OsAffx.25685.1.S1_at11/113+29803099..29803622expressed protein
LOC_Os03g52030OsAffx.13463.1.S1_at11/113+29805395..29805838hypothetical protein
LOC_Os03g52040Os.20341.1.S1_s_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.20341.2.S1_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.25253.1.S1_at9/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.10728.1.S1_at1/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.15597.1.S1_a_at11/113+29821645..29826326Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.20341.1.S1_s_at1/113+29821645..29826326Serine carboxypeptidase family protein, expressed
LOC_Os03g52080OsAffx.3580.1.S1_at10/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.52150.1.S1_at2/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.20341.1.S1_s_at1/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.52150.1.S1_x_at1/113+29831505..29838042Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
GO:0016868molecular_functionintramolecular transferase activity, phosphotransferases
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25253.1.S1_at--948--9811Chr03:29810722..29810746 (25 bp)
TAAAGTTTGCATGTATAGGGTAGAA
LOC_Os03g52040
Os.25253.1.S1_at--1081--10231Chr03:29810757..29810781 (25 bp)
TTTGGTGGGTCCGAAACTGATAGCC
LOC_Os03g52040
Os.25253.1.S1_at--1094--1951Chr03:29810772..29810796 (25 bp)
ACTGATAGCCGGTGCCACCCTGCTA
LOC_Os03g52040
Os.25253.1.S1_at--180--1811Chr03:29810788..29810812 (25 bp)
ACCCTGCTAACGACTGATTGCTAAT
LOC_Os03g52040
Os.25253.1.S1_at--269--91Chr03:29810811..29810835 (25 bp)
ATTAGCGATTCGAAATGGTTTGGAT
LOC_Os03g52040
Os.25253.1.S1_at--343--9791Chr03:29810878..29810902 (25 bp)
TAAGTTATTTCTCGGTTCCTAATAT
LOC_Os03g52040
Os.25253.1.S1_at--693--6873Chr06:16012210..16012229 (20 bp)
GTATTTACCCGTTACAATGCACGGA
LOC_Os06g28194
Os.25253.1.S1_at--534--3016Chr11:22097928..22097949 (22 bp)
AATGCACGGATATTTTTTCTAGCTG
NONE
Os.25253.1.S1_at--313--10391Chr03:29810941..29810965 (25 bp)
TTTTCTAGCTGGACCTTAATTGAGA
LOC_Os03g52040
Os.25253.1.S1_at--688--9791Chr03:29810968..29810992 (25 bp)
TAACCTTGCAGGTATGTTGGTGTGG
LOC_Os03g52040
Os.25253.1.S1_at--1099--10571Chr03:29811214..29811238 (25 bp)
TTCTCATGTTGGCTCAATCGAATAT
LOC_Os03g52040
Target Sequence 
TAAAGTTTGCATGTATAGGGTAGAAAAAATATATATTTGGTGGGTCCGAAACTGATAGCCGGTGCCACCCTGCTAACGAC
TGATTGCTAATTAGCGATTCGAAATGGTTTGGATTAAGTAATTACCTTATTATAGTGTATAGCAATTCTAATATTTTAAG
TTATTTCTCGGTTCCTAATATTAAAAAAACGTATTTACCCGTTACAATGCACGGATATTTTTTCTAGCTGGACCTTAATT
GAGAAATAACCTTGCAGGTATGTTGGTGTGGACGAGGAGACGGGCACTGAGCTCTTCTACTACTTCGTTGAATCGGAGAG
GAGCCCAAGTACAGGCCCTGTGATCCTTTGGTTGACAGGCGGGCCTGGCTGCTCCGGATTAAGCGGTGTCGTCTTTGAAG
TAGGTTAGTAGTAGTGATTGGGATTTGATGATGAGAAAAAGATTTGTAGAACTGACAGAGACTATGCTTTCATTGCTCTA
AGGTTAATACTATTCTCATGTTGGCTCAATCGAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis