Browse Element(s) Details


Os.9232.1.S1_x_at

Description gb:BE040070
DB_XREF= gi:8335086
DB_XREF=OD101E10
TID=Os.9232.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.9232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) partial mRNA for BSD protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5200011/11BSD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51970Os.49751.1.S1_at10/113+29774009..29776376expressed protein
LOC_Os03g51980Os.11143.1.S1_at11/113+29778056..29779054expressed protein
LOC_Os03g51990OsAffx.13462.1.S1_at11/113+29786820..29788818ACT domain containing protein, expressed
LOC_Os03g52000Os.9232.1.S1_x_at11/113+29789048..29793799BSD domain containing protein, expressed
LOC_Os03g52010Os.53266.1.S1_at11/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.3.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.1.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52020OsAffx.25685.1.S1_at11/113+29803099..29803622expressed protein
LOC_Os03g52030OsAffx.13463.1.S1_at11/113+29805395..29805838hypothetical protein
LOC_Os03g52040Os.20341.1.S1_s_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.20341.2.S1_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.25253.1.S1_at9/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.10728.1.S1_at1/113+29809467..29815150Serine carboxypeptidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9232.1.S1_x_at--678--3551Chr03:29789618..29789642 (25 bp)
CATCTATGCTACAACAGACCGCTTC
LOC_Os03g52000
Os.9232.1.S1_x_at--46--3651Chr03:29789597..29789621 (25 bp)
CTTCCGTCATCCCTATAACAGATTT
LOC_Os03g52000
Os.9232.1.S1_x_at--318--5991Chr03:29789571..29789595 (25 bp)
GAGACCGAAAAGCATCCTATCCAAG
LOC_Os03g52000
Os.9232.1.S1_x_at--452--6251Chr03:29789493..29789517 (25 bp)
GATGGTAGCAAGACCCCAAATGTTT
LOC_Os03g52000
Os.9232.1.S1_x_at--191--5132Chr12:16251405..16251508 (24 bp)
GCACACAACCATTCCCATAGGTGAT
NONE
Os.9232.1.S1_x_at--347--4471Chr03:29789312..29789336 (25 bp)
GCCTGTATGTTGGAAACTTGCCTTT
LOC_Os03g52000
Os.9232.1.S1_x_at--631--6951Chr03:29789228..29789252 (25 bp)
GTAGAGCTGCTTTGTTTTGGTTTCA
LOC_Os03g52000
Os.9232.1.S1_x_at--630--6951Chr03:29789178..29789202 (25 bp)
GTAGAGCTGCTTTGTTTTGGCTCAA
LOC_Os03g52000
Os.9232.1.S1_x_at--757--10231Chr03:29789163..29789187 (25 bp)
TTTGGCTCAAGCTGCCCTGATGGAA
LOC_Os03g52000
Os.9232.1.S1_x_at--1005--4531Chr03:29789150..29789174 (25 bp)
GCCCTGATGGAAGCACTGTGGTCAC
LOC_Os03g52000
Os.9232.1.S1_x_at--800--8631Chr03:29789134..29789158 (25 bp)
TGTGGTCACCAGCATTACGGTTTGT
LOC_Os03g52000
Target Sequence 
CATCTATGCTACAACAGACCGCTTCCGTCATCCCTATAACAGATTTTGAGACCGAAAAGCATCCTATCCAAGTAACTGAA
GTTGCAGTAGTCGACAAATCTGTCATCAAAGAGCAGCTTACCAAGGATGGTAGCAAGACCCCAAATGTTTTGCAAGAAAG
CTTTGATGATGACATAGATGATTGGTTCGACGAGGAGGCCGAGCTCTCCGGGCACACAACCATTCCCATAGGTGATGAGG
AAGATGTGTCTTTTAGTGACTTGGAGGATGATGATGGGAAATGATTNTAGGTCATGGNCAATTTCAGCCTGTATGTTGGA
AACTTGCCTTTTNTACTGTACAAGCGAAGTTGAAATCGTTTTGTCAATAGAATGAAAGCTGTATAGTGAAGTAGAGCTGC
TTTGTTTTGGTTTCAAGCTGCCCGGTTGGAAGCAGTGAAAGTAGAGCTGCTTTGTTTTGGCTCAAGCTGCCCTGATGGAA
GCACTGTGGTCACCAGCATTACGGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9232.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis