Browse Element(s) Details


Os.49751.1.S1_at

Description gb:AK073578.1
DB_XREF= gi:32983601
TID=Os.49751.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048N01, full insert sequence.
FL= gb:AK073578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5197010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51960Os.16838.1.S1_at11/113+29749203..29751079UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g51960Os.23313.1.S1_x_at1/113+29749203..29751079UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g51970Os.49751.1.S1_at10/113+29774009..29776376expressed protein
LOC_Os03g51980Os.11143.1.S1_at11/113+29778056..29779054expressed protein
LOC_Os03g51990OsAffx.13462.1.S1_at11/113+29786820..29788818ACT domain containing protein, expressed
LOC_Os03g52000Os.9232.1.S1_x_at11/113+29789048..29793799BSD domain containing protein, expressed
LOC_Os03g52010Os.53266.1.S1_at11/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.3.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.1.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49751.1.S1_at--1109--8211Chr03:29775792..29775816 (25 bp)
GGAATTGCCTATCGGAGTCTCTGAA
LOC_Os03g51970
Os.49751.1.S1_at--974--1571Chr03:29775842..29775866 (25 bp)
AGCTCAGGGTTTGATTCATCCCCAG
LOC_Os03g51970
Os.49751.1.S1_at--1017--1751Chr03:29775963..29775987 (25 bp)
ACCTGCGGGATGATCTCGGTTCAGT
LOC_Os03g51970
Os.49751.1.S1_at--707--8811Chr03:29775988..29776012 (25 bp)
TGTTGTAAATCATCCGAGCATCCGC
LOC_Os03g51970
Os.49751.1.S1_at--397--551Chr03:29776007..29776031 (25 bp)
ATCCGCCTGGTGTGAGCTTCTTGAT
LOC_Os03g51970
Os.49751.1.S1_at--1032--1871Chr03:29776068..29776092 (25 bp)
ACGATTCAATCAGTCTTCACCTTGT
LOC_Os03g51970
Os.49751.1.S1_at--344--10471Chr03:29776127..29776151 (25 bp)
TTACCTCGGTGCTTTGTCATTCAGA
LOC_Os03g51970
Os.49751.1.S1_at--603--7431Chr03:29776160..29776184 (25 bp)
GTGTTTTTGGTATTTCTGCTCTGTT
LOC_Os03g51970
Os.49751.1.S1_at--775--10791Chr03:29776199..29776223 (25 bp)
TTGTAACCTTCACCTTGGATCTTGA
LOC_Os03g51970
Os.49751.1.S1_at--188--2451NONE
AAAATATCCCATGCTGTGACGCCAT
NONE
Os.49751.1.S1_at--693--751Chr03:29776317..29776341 (25 bp)
ATGTAATCCGATCCTTGTCTTGCTT
LOC_Os03g51970
Target Sequence 
GGAATTGCCTATCGGAGTCTCTGAATCTTTTAAATGATGGCTGGGATTCAAGCTCAGGGTTTGATTCATCCCCAGTTGGT
GTTCTGCAGAAGACCACCTTTGGATCAGTATCCAGTAGCACCGGAAGCAGTCCTAGACTGGAGAATCATAGTGTTTATGA
TGGCAACAGTAACCTGCGGGATGATCTCGGTTCAGTTGTTGTAAATCATCCGAGCATCCGCCTGGTGTGAGCTTCTTGAT
CAACAAAAAATGCAACAAGATGACAGGCATGAGGAAACGATTCAATCAGTCTTCACCTTGTTACATATCGTTATGACGTC
TTCAAGTGTGAGCATTTACCTCGGTGCTTTGTCATTCAGACTAATCTTGTGTTTTTGGTATTTCTGCTCTGTTATTTTTC
CTTTGCTTTGTAACCTTCACCTTGGATCTTGACGTGATATGACGTGTGGTATGGATGGATTTGGTACTCCATTGTGGCAT
ATCATCTTAAAATATCCCATGCTGTGACGCCATAATCGCGGATGAATGTAATCCGATCCTTGTCTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis