Browse Element(s) Details


Os.23313.1.S1_x_at

Description gb:AK059020.1
DB_XREF= gi:32969038
TID=Os.23313.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0050M22.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-B03, full insert sequence.
FL= gb:AK059020.1 gb:AK099420.1 gb:AK067045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5195011/11expressed protein
LOC_Os03g519601/11UPF0308 protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51900Os.14204.1.S1_at11/113+29716693..29724741DEAD/DEAH box helicase family protein, expressed
LOC_Os03g51910Os.24540.1.A1_at11/113+29725371..29727471Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g51920Os.17136.1.S1_at11/113+29735174..29737573expressed protein
LOC_Os03g51930Os.19523.1.S1_at11/113+29739046..29741681expressed protein
LOC_Os03g51940NANA3+29743049..29743348NA
LOC_Os03g51950Os.23313.1.S1_x_at11/113+29745306..29748361expressed protein
LOC_Os03g51960Os.16838.1.S1_at11/113+29749203..29751079UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g51960Os.23313.1.S1_x_at1/113+29749203..29751079UPF0308 protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23313.1.S1_x_at--421--31Chr03:29746310..29746334 (25 bp)
ATTGGTCGCACATTCTTCAATCCAG
LOC_Os03g51950
Os.23313.1.S1_x_at--1146--571Chr03:29746216..29746315 (25 bp)
ATCCAGCCAGTGCAAGTGTGTTTTC
LOC_Os03g51950
Os.23313.1.S1_x_at--1117--8771Chr03:29746198..29746222 (25 bp)
TGTTTTCACGATTTGACTCCCTCAA
LOC_Os03g51950
Os.23313.1.S1_x_at--708--652Chr03:29745938..29745962 (25 bp)
ATGCACCTCTGGATGATGTCCTCAA
LOC_Os03g51950
Os.23313.1.S1_x_at--427--2511Chr03:29745915..29745939 (25 bp)
AACATCTGTTGTAAAGCCCCTGCGG
LOC_Os03g51950
Os.23313.1.S1_x_at--642--4531Chr03:29745900..29745924 (25 bp)
GCCCCTGCGGCATGATATTGTGTAA
LOC_Os03g51950
Os.23313.1.S1_x_at--974--6711Chr03:29745564..29745588 (25 bp)
GTTCTGTTCGTGTCCCAAAGTTGTA
LOC_Os03g51950
Os.23313.1.S1_x_at--846--1191Chr03:29745492..29745516 (25 bp)
AGTATCTCTTTGTCTGTACGTCTGA
LOC_Os03g51950
Os.23313.1.S1_x_at--1090--9931Chr03:29745476..29745500 (25 bp)
TACGTCTGATCTACCATGCTGTTGA
LOC_Os03g51950
Os.23313.1.S1_x_at--1043--951Chr03:29745406..29745430 (25 bp)
AGGACTTTCTCATGCCATAAGCTCA
LOC_Os03g51950
Os.23313.1.S1_x_at--941--9791Chr03:29745389..29745413 (25 bp)
TAAGCTCAGCAGTTCTTTTCCTTTT
LOC_Os03g51950
Target Sequence 
ATTGGTCGCACATTCTTCAATCCAGCCAGTGCAAGTGTGTTTTCACGATTTGACTCCCTCAAGGAGGCAGTGAAGAACTA
TACAATTGAAGCCACCCCAGATGATAGGGCTAGTGTTCTACAACAGGGTGGAATGTTTGTGTTCAGAGGGAAAGAATTAA
TATATGCAAGGAAAGATGAGGGCACTGGTGATCATGCACCTCTGGATGATGTCCTCAACATCTGTTGTAAAGCCCCTGCG
GCATGATATTGTGTAATCAATGTCCCATGAGAATTTTCATAGCCTGGTTCTGTTCGTGTCCCAAAGTTGTATGCAGAAAA
GCATCTCTTGATTTTGGAAGGCTGGCTTCTGCAAGGATAGTATCTCTTTGTCTGTACGTCTGATCTACCATGCTGTTGAT
ATGTAATATATCAGTTGAAAACTTGAGGGATGTAGGCAGACCAAAGGACTTTCTCATGCCATAAGCTCAGCAGTTCTTTT
CCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23313.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis