Browse Element(s) Details


Os.14204.1.S1_at

Description gb:AK121524.1
DB_XREF= gi:37991147
TID=Os.14204.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029D07, full insert sequence.
FL= gb:AK068068.1 gb:AK121524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5190011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51870Os.16055.1.S1_at11/113+29692492..29695814FHA domain containing protein, expressed
LOC_Os03g51880Os.54926.1.S1_at11/113+29696280..29698422expressed protein
LOC_Os03g51890Os.22825.1.A1_at11/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.25682.1.S1_at8/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.11524.1.S1_at2/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.11074.1.S1_s_at1/113+29699422..29706412hypothetical protein
LOC_Os03g51900Os.14204.1.S1_at11/113+29716693..29724741DEAD/DEAH box helicase family protein, expressed
LOC_Os03g51910Os.24540.1.A1_at11/113+29725371..29727471Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g51920Os.17136.1.S1_at11/113+29735174..29737573expressed protein
LOC_Os03g51930Os.19523.1.S1_at11/113+29739046..29741681expressed protein
LOC_Os03g51940NANA3+29743049..29743348NA
LOC_Os03g51950Os.23313.1.S1_x_at11/113+29745306..29748361expressed protein
LOC_Os03g51960Os.16838.1.S1_at11/113+29749203..29751079UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g51960Os.23313.1.S1_x_at1/113+29749203..29751079UPF0308 protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14204.1.S1_at--88--6091Chr03:29723081..29723105 (25 bp)
GAGTACCTTATTGATCCCACAACAA
LOC_Os03g51900
Os.14204.1.S1_at--1028--6931Chr03:29723120..29723144 (25 bp)
GTAGTCAAACTTTCAAGGGCTGCTA
LOC_Os03g51900
Os.14204.1.S1_at--1125--3211Chr03:29723133..29723157 (25 bp)
CAAGGGCTGCTATGGATATCGATAA
LOC_Os03g51900
Os.14204.1.S1_at--901--6931Chr03:29723205..29723229 (25 bp)
GTAGTGATCCCCTTAAGACTTTCTC
LOC_Os03g51900
Os.14204.1.S1_at--166--8991Chr03:29724445..29724469 (25 bp)
TGAAGCGTTCACTGCCAAGTGCGCA
LOC_Os03g51900
Os.14204.1.S1_at--1104--2851Chr03:29724461..29724485 (25 bp)
AAGTGCGCACAGTTTTGTAGGTTTC
LOC_Os03g51900
Os.14204.1.S1_at--1055--1011Chr03:29724479..29724503 (25 bp)
AGGTTTCTGGTATCTCGTCCTGTAA
LOC_Os03g51900
Os.14204.1.S1_at--135--7251Chr03:29724495..29724519 (25 bp)
GTCCTGTAACTTTGTAGCATCTCCA
LOC_Os03g51900
Os.14204.1.S1_at--344--631Chr03:29724554..29724578 (25 bp)
ATGCTGCGTGTGCTATGCTATGCAC
LOC_Os03g51900
Os.14204.1.S1_at--844--6731Chr03:29724621..29724645 (25 bp)
GTTCTTCTAGAGGACGTGCATATTG
LOC_Os03g51900
Os.14204.1.S1_at--662--7331Chr03:29724636..29724660 (25 bp)
GTGCATATTGCCATTCCTCTATTTA
LOC_Os03g51900
Target Sequence 
GAGTACCTTATTGATCCCACAACAAAAGAAGCAAGCAATGTAGTCAAACTTTCAAGGGCTGCTATGGATATCGATAAGCC
ACGGAGGAGGAAAAGAATGGGATTCAAGGGAGGATCTGGCAGAAGTAGTGATCCCCTTAAGACTTTCTCTGCTGAGGGGA
AATCACGGAGGCGAGGGAGGAAGGAAAGAGACGGAGAACAGGATAGAAGAAAGAGGAAGAAGGTGGAAAGCTAATCTTTT
GTGAAGCGTTCACTGCCAAGTGCGCACAGTTTTGTAGGTTTCTGGTATCTCGTCCTGTAACTTTGTAGCATCTCCAGATA
TAGGGGGATAACAATGTCAAGCTTTACTGNATGCTGCGTGTGCTATGCTATGCACACCATTATATAGACAGACGAGTAGA
GAGTTTGTTTAGTTTCAGTTCTTCTAGAGGACGTGCATATTGCCATTCCTCTATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis