Browse Element(s) Details


OsAffx.11524.1.S1_at

Description gb:NM_192071.1
DB_XREF= gi:34911225
GEN=P0445E10.11
TID=OsAffx.11524.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0445E10.11 (P0445E10.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4905011/11hypothetical protein
LOC_Os03g518902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49010Os.54277.2.S1_s_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010OsAffx.9291.1.S1_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.54277.1.S1_a_at8/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.51891.1.S1_at2/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.47327.1.S1_x_at1/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49020OsAffx.21499.1.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49020OsAffx.21499.2.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49030Os.32753.1.S1_at11/111+28503593..28504604expressed protein
LOC_Os01g49050OsAffx.11524.1.S1_at11/111+28507716..28508525hypothetical protein
LOC_Os01g49050OsAffx.11074.1.S1_s_at1/111+28507716..28508525hypothetical protein
LOC_Os01g49060Os.6811.1.S1_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.6811.1.S1_s_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.41701.1.S1_x_at9/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.33918.1.S1_x_at6/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.53602.1.S1_at1/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49070NANA1+28524828..28525142hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11524.1.S1_at--778--1891Chr01:28507747..28507771 (25 bp)
ACGTAGCGAGGATCATCTCGATGAT
LOC_Os01g49050
OsAffx.11524.1.S1_at--400--10432Chr01:28507814..28507837 (24 bp)
TTATGTCAAGCCTCTGTCCTACAGA
LOC_Os01g49050
OsAffx.11524.1.S1_at--162--7271Chr01:28507829..28507985 (25 bp)
GTCCTACAGATATGTCTTAGTGGCT
LOC_Os01g49050
OsAffx.11524.1.S1_at--889--851Chr01:28508343..28508367 (25 bp)
ATGGCTATTGCAGCCTTGAGCACTG
LOC_Os01g49050
OsAffx.11524.1.S1_at--692--8911Chr01:28508359..28508383 (25 bp)
TGAGCACTGCCCTATTTGCTAGACA
LOC_Os01g49050
OsAffx.11524.1.S1_at--391--10731Chr01:28508374..28508398 (25 bp)
TTGCTAGACAGCACAGATTTTGCAT
LOC_Os01g49050
OsAffx.11524.1.S1_at--488--6531Chr01:28508389..28508413 (25 bp)
GATTTTGCATCAGCGTGTTTAAGTG
LOC_Os01g49050
OsAffx.11524.1.S1_at--1067--2854Chr01:28508409..28508433 (25 bp)
AAGTGCACACGGTTCCTAGTTGGAT
LOC_Os01g49050
OsAffx.11524.1.S1_at--768--1231Chr01:28508426..28508450 (25 bp)
AGTTGGATTTGTGCTAGCGGTGTCT
LOC_Os01g49050
OsAffx.11524.1.S1_at--426--1631Chr01:28508441..28508465 (25 bp)
AGCGGTGTCTGTTGGATTTCTTAGC
LOC_Os01g49050
OsAffx.11524.1.S1_at--402--10271Chr01:28508457..28508481 (25 bp)
TTTCTTAGCGCCGTCAAGGCATTAG
LOC_Os01g49050
Target Sequence 
ACGTAGCGAGGATCATCTCGATGATCCTCGCCATCGGGGTAATGTGTGTCATTTATATACCGACATCTTATGTCAAGCCT
CTGTCCTACAGATATGTCTTAGTGGCTATGTGGNTNNAGGTGCTTATGTGTTGCACGTGGGGTATGGCTATTGCAGCCTT
GAGCACTGCCCTATTTGCTAGACAGCACAGATTTTGCATCAGCGTGTTTAAGTGCACACGGTTCCTAGTTGGATTTGTGC
TAGCGGTGTCTGTTGGATTTCTTAGCGCCGTCAAGGCATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis