Browse Element(s) Details


Os.32753.1.S1_at

Description gb:AK103030.1
DB_XREF= gi:32988239
TID=Os.32753.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0445E10.8 (P0445E10.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117C05, full insert sequence.
FL= gb:AK103030.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4903011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49010Os.54277.2.S1_s_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010OsAffx.9291.1.S1_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.54277.1.S1_a_at8/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.51891.1.S1_at2/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.47327.1.S1_x_at1/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49020OsAffx.21499.1.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49020OsAffx.21499.2.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49030Os.32753.1.S1_at11/111+28503593..28504604expressed protein
LOC_Os01g49050OsAffx.11524.1.S1_at11/111+28507716..28508525hypothetical protein
LOC_Os01g49050OsAffx.11074.1.S1_s_at1/111+28507716..28508525hypothetical protein
LOC_Os01g49060Os.6811.1.S1_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.6811.1.S1_s_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.41701.1.S1_x_at9/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.33918.1.S1_x_at6/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.53602.1.S1_at1/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49070NANA1+28524828..28525142hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32753.1.S1_at--40--4691Chr01:28504093..28504117 (25 bp)
GCGGTCAAGTACCTGGCCATCTCGC
LOC_Os01g49030
Os.32753.1.S1_at--578--8091Chr01:28504292..28504316 (25 bp)
GGAGCCACTCCTGGTCGCTGGGACT
LOC_Os01g49030
Os.32753.1.S1_at--560--8471Chr01:28504337..28504361 (25 bp)
TGGCGCTCTTCATGTGGACGTTCGG
LOC_Os01g49030
Os.32753.1.S1_at--110--4011Chr01:28504379..28504403 (25 bp)
CGTGCAGCGTGCTCATGTGCGGACT
LOC_Os01g49030
Os.32753.1.S1_at--920--8691Chr01:28504394..28504418 (25 bp)
TGTGCGGACTGCTCTACTTCCTCGA
LOC_Os01g49030
Os.32753.1.S1_at--698--7971Chr01:28504451..28504475 (25 bp)
GGATCCACCACGGTCACAAGGATAG
LOC_Os01g49030
Os.32753.1.S1_at--411--6491Chr01:28504471..28504495 (25 bp)
GATAGCACCGTGTAGCAGCACTAGT
LOC_Os01g49030
Os.32753.1.S1_at--927--6931Chr01:28504501..28504525 (25 bp)
GTAGTAACCAGTTTCTCGATGGCAT
LOC_Os01g49030
Os.32753.1.S1_at--929--6831Chr01:28504511..28504535 (25 bp)
GTTTCTCGATGGCATGGATGTACAT
LOC_Os01g49030
Os.32753.1.S1_at--594--1391Chr01:28504548..28504572 (25 bp)
AGACCCATCAATTGTTTTGCTTGAG
LOC_Os01g49030
Os.32753.1.S1_at--602--6091Chr01:28504570..28504594 (25 bp)
GAGTAATGAACTCAGTCACAGGAGA
LOC_Os01g49030
Target Sequence 
GCGGTCAAGTACCTGGCCATCTCGCTCTGCTTCATGCTCGCCTTCGTCTGCAACGTGCAGGCCATCCGCCTGTACGCGCA
CGCCAGCTTCCTCCTCGGCCTGCCGCCCGTCGCCGGCGAGGGGGAGGGGGAGGCGGCGGCGGCGGCGGCGGTAGCGCGGG
AGGAGTTCGCGGCGTACGTGGCGCGGACGGTGAACAGGGGGAGCCACTCCTGGTCGCTGGGACTCCGCGCCTTCTACGCG
TCGCTGGCGCTCTTCATGTGGACGTTCGGGCCCATCCCGATGCTGGCGTGCAGCGTGCTCATGTGCGGACTGCTCTACTT
CCTCGACACCACCAGGGAGCGCGCCGCCGCCGTGGCCGGGATCCACCACGGTCACAAGGATAGCACCGTGTAGCAGCACT
AGTAGTAAGTAGTAACCAGTTTCTCGATGGCATGGATGTACATCTATTGATCTATAGACCCATCAATTGTTTTGCTTGAG
TAATGAACTCAGTCACAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis