Browse Element(s) Details


Os.33918.1.S1_x_at

Description gb:NM_192081.1
DB_XREF= gi:34911245
GEN=P0445E10.21
TID=Os.33918.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33918 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0445E10.21 (P0445E10.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0445E10.21 (P0445E10.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4911011/11protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g490606/11Protein prenyltransferase alpha subunit repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49080OsAffx.11525.1.S1_at7/111+28535960..28537802hypothetical protein
LOC_Os01g49080OsAffx.29394.1.S1_s_at1/111+28535960..28537802hypothetical protein
LOC_Os01g49090NANA1+28545305..28547063hypothetical protein
LOC_Os01g49110Os.53602.1.S1_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.33918.1.S1_x_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.41701.1.S1_x_at3/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49120Os.14869.1.S1_at11/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49120Os.41694.1.S1_at8/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49130NANA1+28566917..28567405hypothetical protein
LOC_Os01g49140OsAffx.23722.1.S1_at8/111+28568614..28569233expressed protein
LOC_Os01g49150OsAffx.23723.2.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49150OsAffx.23723.1.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49160Os.4901.1.S1_at11/111+28576998..28578364Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33918.1.S1_x_at--568--5452Chr01:28560490..28560514 (25 bp)
GAACGAGTTACATGTCGCTGACAAC
LOC_Os01g49110
Os.33918.1.S1_x_at--358--2192Chr01:28560510..28560534 (25 bp)
ACAACTGTTGTTTTCACTACCGACG
LOC_Os01g49110
Os.33918.1.S1_x_at--988--7792Chr01:28560680..28560703 (24 bp)
GGTCCCTACTGCTTGCATTACTAGA
LOC_Os01g49110
Os.33918.1.S1_x_at--68--6331Chr01:28561000..28561024 (25 bp)
GATGCTTATCAGACGCTACCAAGGG
LOC_Os01g49110
Os.33918.1.S1_x_at--639--6012Chr01:28561024..28561142 (25 bp)
GAGAGAGTCTTTGTGGATCCATCGT
LOC_Os01g49110
Os.33918.1.S1_x_at--332--171Chr01:28561143..28561167 (25 bp)
ATTTTCCTCTCGCAATGGTGGGTGA
LOC_Os01g49110
Os.33918.1.S1_x_at--357--631Chr01:28561267..28561291 (25 bp)
ATGCTCCTGCCGATGAATTTGGTGA
LOC_Os01g49110
Os.33918.1.S1_x_at--213--7431Chr01:28561297..28561321 (25 bp)
GTGTTCAAACTGAGCTTGCAGCCCT
LOC_Os01g49110
Os.33918.1.S1_x_at--328--4552Chr01:28561317..28561341 (25 bp)
GCCCTCTACATTCTCTGGATATCAA
LOC_Os01g49110
Os.33918.1.S1_x_at--948--991Chr01:28561497..28561521 (25 bp)
AGGATGTCTTAGCAAGGGCCTGCCC
LOC_Os01g49110
Os.33918.1.S1_x_at--1034--2872Chr01:28561510..28561534 (25 bp)
AAGGGCCTGCCCACTATTGAAAGCA
LOC_Os01g49110
Target Sequence 
GAACGAGTTACATGTCGCTGACAACTGTTGTTTTCACTACCGACGGTCCCTACTGCTTGCATTACTAGACAGTTGCCATG
TAGAGGACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAGGAGGAACTGACGTGGAATCAGATG
CTTATCAGACGCTACCAAGGGAGAGAGTCTTTGTGGATCCATCGTATTTTCCTCTCGCAATGGTGGGTGAAGTTCTCGCT
CAGCAGTGAGGAAACAGAGTGTGCTGCAGGCACTTCGCTGGTGGACCTCTTCCTAGCCCAGGAGATATACCTCCTGTCAG
ACCGCCTGAATGCTCCTGCCGATGAATTTGGTGAGGCATGTGTTCAAACTGAGCTTGCAGCCCTCTACATTCTCTGGATA
TCAAAGCAAGTTCCGGCTGTGAAACTAAAGCTGGAAAAAAGGCTACATTCGGTGGGGAGCCTGGAGGATGTCTTAGCAAG
GGCCTGCCCACTATTGAAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33918.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis