Browse Element(s) Details


OsAffx.23722.1.S1_at

Description gb:NM_192083.1
DB_XREF= gi:34911249
GEN=P0445E10.23
TID=OsAffx.23722.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0445E10.23 (P0445E10.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g491408/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49090NANA1+28545305..28547063hypothetical protein
LOC_Os01g49110Os.53602.1.S1_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.33918.1.S1_x_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.41701.1.S1_x_at3/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49120Os.14869.1.S1_at11/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49120Os.41694.1.S1_at8/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49130NANA1+28566917..28567405hypothetical protein
LOC_Os01g49140OsAffx.23722.1.S1_at8/111+28568614..28569233expressed protein
LOC_Os01g49150OsAffx.23723.2.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49150OsAffx.23723.1.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49160Os.4901.1.S1_at11/111+28576998..28578364Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g49180OsAffx.21494.1.S1_x_at11/111+28588263..28599915DNA ligase I, ATP-dependent family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23722.1.S1_at--324--2791Chr01:28568794..28568818 (25 bp)
AAGAGTGTTTCTTCATCTGGCTGGC
LOC_Os01g49140
OsAffx.23722.1.S1_at--168--1411Chr01:28568909..28568933 (25 bp)
AGACTGCCATCATCTCTTGGTGAAA
LOC_Os01g49140
OsAffx.23722.1.S1_at--146--2491Chr01:28568946..28568970 (25 bp)
AACAGAGTTTGGTCCCTACTCAGAG
LOC_Os01g49140
OsAffx.23722.1.S1_at--382--371Chr01:28568976..28569000 (25 bp)
ATCAATGTTCACTTTGACATCCCCG
LOC_Os01g49140
OsAffx.23722.1.S1_at--1110--5691Chr01:28569004..28569028 (25 bp)
GACTAGATCTATCCCTGGCAGACTG
LOC_Os01g49140
OsAffx.23722.1.S1_at--78--1411Chr01:28569023..28569047 (25 bp)
AGACTGGTGGCAACTCGCACGGACT
LOC_Os01g49140
OsAffx.23722.1.S1_at--858--8111Chr01:28569043..28569067 (25 bp)
GGACTCGTTTTCAGACGCGCTACAG
LOC_Os01g49140
OsAffx.23722.1.S1_at--299--1451Chr01:28569142..28569166 (25 bp)
AGAAGTTCAATACGGCTGACCTCCT
LOC_Os01g49140
OsAffx.23722.1.S1_at--46--3591Chr01:28569428..28569452 (25 bp)
CATTCAGCTTACAGATCATCGCCAG
NONE
OsAffx.23722.1.S1_at--382--2911Chr01:28569456..28569480 (25 bp)
AAGGATTCACCATTTCAGCAGCATA
NONE
OsAffx.23722.1.S1_at--676--6091Chr01:28569486..28569510 (25 bp)
GAGTCTACCTACTACATGCACATGA
NONE
Target Sequence 
AAGAGTGTTTCTTCATCTGGCTGGCGGTGAAAGGGCGCTGCTTAACCGGGGATAATCTCGCCAAACGTGGATGGCCTCAT
GACCCACTTTGTGCCCTCTGCTCAATTGATATGGAAGACTGCCATCATCTCTTGGTGAAATGCCCTTACACAAACAGAGT
TTGGTCCCTACTCAGAGATAGGATCAATGTTCACTTTGACATCCCCGGGCGACTAGATCTATCCCTGGCAGACTGGTGGC
AACTCGCACGGACTCGTTTTCAGACGCGCTACAGTAAAGCCTTTGATACGTTTTTCATGCTTGTTTGCTGGCTCGTGTGG
AAGGAACGTAACGCGAGGGTTTTCGATCAGAAGTTCAATACGGCTGACCTCCTTTCAGCAGACATCAAGGAGGAGNTNNC
ANNGNNNANANNANNANNTANCNNNNNNNNNNNNGNNNNGGATCTGGCAAACATTCAGCTTACAGATCATCGCCAGCAAA
AGGATTCACCATTTCAGCAGCATATGTTAGAGTCTACCTACTACATGCACATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis