Browse Element(s) Details


OsAffx.21494.1.S1_x_at

Description gb:NM_192088.1
DB_XREF= gi:34911259
GEN=P0478H03.22
TID=OsAffx.21494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative DNA ligase (P0478H03.22), mRNA.
PROD=putative DNA ligase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4918011/11DNA ligase I, ATP-dependent family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49120Os.14869.1.S1_at11/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49120Os.41694.1.S1_at8/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49130NANA1+28566917..28567405hypothetical protein
LOC_Os01g49140OsAffx.23722.1.S1_at8/111+28568614..28569233expressed protein
LOC_Os01g49150OsAffx.23723.2.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49150OsAffx.23723.1.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49160Os.4901.1.S1_at11/111+28576998..28578364Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g49180OsAffx.21494.1.S1_x_at11/111+28588263..28599915DNA ligase I, ATP-dependent family protein, expressed
LOC_Os01g49190Os.10496.2.S1_x_at11/111+28604547..28608863ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os01g49190Os.10496.1.S1_at10/111+28604547..28608863ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os01g49200Os.33042.1.S1_at11/111+28609661..28613939Microtubule associated protein containing protein, expressed
LOC_Os01g49210Os.29003.2.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_at11/111+28616229..28617119expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0003910molecular_functionDNA ligase (ATP) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21494.1.S1_x_at--3--8371Chr01:28590348..28590372 (25 bp)
GGCGTGCTACAACCCTGAATACGAA
LOC_Os01g49180
OsAffx.21494.1.S1_x_at--398--2791Chr01:28590325..28590349 (25 bp)
AAGAGTTCCAAAGTGTCTGCCGCGT
LOC_Os01g49180
OsAffx.21494.1.S1_x_at--60--9171Chr01:28590308..28590332 (25 bp)
TGCCGCGTTATGTCTGGTTTCTCAG
LOC_Os01g49180
OsAffx.21494.1.S1_x_at--520--5311Chr01:28588870..28588894 (25 bp)
GAAGGAGTTCTATTCTGGCGACAGA
LOC_Os01g49180
OsAffx.21494.1.S1_x_at--867--5231Chr01:28588847..28588871 (25 bp)
GAATACTGCCCAAGAAACCTGTTTA
LOC_Os01g49180
OsAffx.21494.1.S1_x_at--3--2431Chr01:28588818..28588842 (25 bp)
AAAACAGACGAGCTTCCGGAGTTGT
LOC_Os01g49180
OsAffx.21494.1.S1_x_at--896--3951Chr01:28588802..28588826 (25 bp)
CGGAGTTGTGGTTTTCTGCGGAACA
LOC_Os01g49180
OsAffx.21494.1.S1_x_at--2--1011Chr01:28588376..28588400 (25 bp)
AGGATGCCGAGGTACATACGCTCTC
LOC_Os01g49180
OsAffx.21494.1.S1_x_at--1095--1131Chr01:28588340..28588364 (25 bp)
AGTCCAGAGGATTGTAGCACGGCTA
LOC_Os01g49180
OsAffx.21494.1.S1_x_at--290--5111Chr01:28588324..28588348 (25 bp)
GCACGGCTACTGATGTTGCTAGCTT
LOC_Os01g49180
OsAffx.21494.1.S1_x_at--282--4931Chr01:28588303..28588327 (25 bp)
GCTTGTTCAAAGCTCAGACCCGGAA
LOC_Os01g49180
Target Sequence 
GGCGTGCTACAACCCTGAATACGAAGAGTTCCAAAGTGTCTGCCGCGTTATGTCTGGTTTCTCAGATGAGTTCTATAAAG
AGCCACAGCCTGCAGCCGCCCTTGCCGACTGCCGCAGGTGCGCCCAACGGCCAGTGGCTGGTGGACTTCCGCTGCTCGAC
TGCTCCGCCTGTCGATGTGCCACCTCCCGCTCGCCCATGCTGTCGCCTGTCGTCACTCATCAGCTGGACGCCGGCTCGAC
GCCGCCAATCGCGCGAGATGGGGAATCAATGGAGATGATGAAGGAGTTCTATTCTGGCGACAGAATACTGCCCAAGAAAC
CTGTTTACTACAAAACAGACGAGCTTCCGGAGTTGTGGTTTTCTGCGGAACAGGTTTGGGAAATCCGAGGTGCAGACCTC
ACGCTATCCCCTGTTCACCATGCGGCTATTGGTCTGGTCCATCCGTCGCGTGGGATCTCAGTGAGGATGCCGAGGTACAT
ACGCTCTCGTCCAGATCGGAGTCCAGAGGATTGTAGCACGGCTACTGATGTTGCTAGCTTGTTCAAAGCTCAGACCCGGA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21494.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis