Browse Element(s) Details


Os.10496.1.S1_at

Description gb:AK064953.1
DB_XREF= gi:32974971
TID=Os.10496.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ATP synthase beta chain, mitochondrial precursor (P0478H03.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001A02, full insert sequence.
FL= gb:AK071414.1 gb:AK064953.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4919010/11ATP synthase beta chain, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49180OsAffx.21494.1.S1_x_at11/111+28588263..28599915DNA ligase I, ATP-dependent family protein, expressed
LOC_Os01g49190Os.10496.2.S1_x_at11/111+28604547..28608863ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os01g49190Os.10496.1.S1_at10/111+28604547..28608863ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os01g49200Os.33042.1.S1_at11/111+28609661..28613939Microtubule associated protein containing protein, expressed
LOC_Os01g49210Os.29003.2.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_at11/111+28616229..28617119expressed protein
LOC_Os01g49230Os.36960.2.S1_x_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49230Os.36960.1.S1_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015986biological_processATP synthesis coupled proton transport
GO:0005739cellular_componentmitochondrion
GO:0005754cellular_componentproton-transporting ATP synthase, catalytic core (sensu Eukaryota)
GO:0009544cellular_componentchloroplast ATP synthase complex
GO:0015078molecular_functionhydrogen ion transporter activity
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10496.1.S1_at--874--8011Chr01:28608543..28608567 (25 bp)
GGAGGTCAACATGTTGTGCCTTTTA
LOC_Os01g49190
Os.10496.1.S1_at--445--8691Chr01:28608557..28608581 (25 bp)
TGTGCCTTTTATGTTTGTTAGCCAG
LOC_Os01g49190
Os.10496.1.S1_at--565--8752Chr01:28608586..28608610 (25 bp)
TGTACTTACATGCAGGAGGCCCGGC
LOC_Os01g49190
Os.10496.1.S1_at--161--9131Chr01:28608613..28608637 (25 bp)
TGCTGATCGATGTTTTTCCCCTCCA
LOC_Os01g49190
Os.10496.1.S1_at--146--7951Chr01:28608653..28608677 (25 bp)
GGATTTGCAGTGACCTATTTGTTTG
LOC_Os01g49190
Os.10496.1.S1_at--879--6851Chr01:28608673..28608697 (25 bp)
GTTTGGCTTACTGCCCTTCAAGGAA
LOC_Os01g49190
Os.10496.1.S1_at--604--9511Chr01:28608707..28608731 (25 bp)
TCTCTTTTTGTGTGATGTGCGGCCA
LOC_Os01g49190
Os.10496.1.S1_at--374--8271Chr01:28608736..28608760 (25 bp)
GGCAGTCCGTGAACTTGTTACTTGC
LOC_Os01g49190
Os.10496.1.S1_at--622--5591Chr01:28608771..28608795 (25 bp)
GAAATATTGGTCTCCCATACAGCAC
LOC_Os01g49190
Os.10496.1.S1_at--470--1511Chr01:28608791..28608815 (25 bp)
AGCACCTCTGTGAAAACTCCTCATT
LOC_Os01g49190
Os.10496.1.S1_at--587--231Chr01:28608843..28608867 (25 bp)
ATATAAGCCGTGTTTCGATTCAAAA
NONE
Target Sequence 
GGAGGTCAACATGTTGTGCCTTTTATGTTTGTTAGCCAGGACATGTACTTACATGCAGGAGGCCCGGCCCTGCTGATCGA
TGTTTTTCCCCTCCACTTTTTTCCAAATAAGGATTTGCAGTGACCTATTTGTTTGGCTTACTGCCCTTCAAGGAAGAATT
GAGTTCTCTTTTTGTGTGATGTGCGGCCAGTCCGGCAGTCCGTGAACTTGTTACTTGCTGAAAACACTGAAATATTGGTC
TCCCATACAGCACCTCTGTGAAAACTCCTCATTTATACTTCCANCATGTTTTGAGAGCCGATATAAGCCGTGTTTCGATT
CAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis