Browse Element(s) Details


Os.33042.1.S1_at

Description gb:AK064024.1
DB_XREF= gi:32974042
TID=Os.33042.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-A09, full insert sequence.
FL= gb:AK102005.1 gb:AK064024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4920011/11Microtubule associated protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49180OsAffx.21494.1.S1_x_at11/111+28588263..28599915DNA ligase I, ATP-dependent family protein, expressed
LOC_Os01g49190Os.10496.2.S1_x_at11/111+28604547..28608863ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os01g49190Os.10496.1.S1_at10/111+28604547..28608863ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os01g49200Os.33042.1.S1_at11/111+28609661..28613939Microtubule associated protein containing protein, expressed
LOC_Os01g49210Os.29003.2.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_at11/111+28616229..28617119expressed protein
LOC_Os01g49230Os.36960.2.S1_x_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49230Os.36960.1.S1_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49240Os.30035.1.S1_at11/111+28634500..28636348UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g49250Os.37407.1.S1_at11/111+28638902..28644122SLL2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0000911biological_processcytokinesis by cell plate formation
GO:0001578biological_processmicrotubule bundle formation
GO:0007020biological_processmicrotubule nucleation
GO:0031116biological_processpositive regulation of microtubule polymerization
GO:0051322biological_processanaphase
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0005874cellular_componentmicrotubule
GO:0009524cellular_componentphragmoplast
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33042.1.S1_at--141--5691Chr01:28613364..28613388 (25 bp)
GACATTGCCGGATTGCCTATCAAGA
LOC_Os01g49200
Os.33042.1.S1_at--477--9551Chr01:28613394..28613418 (25 bp)
TCTTTCAATGCCAGTACTCTACGTG
LOC_Os01g49200
Os.33042.1.S1_at--1137--8051Chr01:28613423..28613447 (25 bp)
GGAGACACCTCGTAAACCTTTTGCT
LOC_Os01g49200
Os.33042.1.S1_at--239--951Chr01:28613459..28613483 (25 bp)
AGGAAACAGTGTCTCGTCGACGCCT
LOC_Os01g49200
Os.33042.1.S1_at--466--9011Chr01:28613548..28613572 (25 bp)
TGAATCCCAAGACTCCGATGACTGT
LOC_Os01g49200
Os.33042.1.S1_at--644--4051Chr01:28613563..28613587 (25 bp)
CGATGACTGTTACGGCTCCAATGCA
LOC_Os01g49200
Os.33042.1.S1_at--609--3011Chr01:28613582..28613606 (25 bp)
AATGCAGATGGCAATGACTCCCTCT
LOC_Os01g49200
Os.33042.1.S1_at--823--4391Chr01:28613610..28613634 (25 bp)
GCCAACAAGGTTTCAGCAACTCCAG
LOC_Os01g49200
Os.33042.1.S1_at--293--5631Chr01:28613676..28613700 (25 bp)
GACATCGACTACTCCTTTGAAGAAA
LOC_Os01g49200
Os.33042.1.S1_at--410--10831Chr01:28613806..28613830 (25 bp)
TTGGTCAACAATAGTCGGCCTTTCC
LOC_Os01g49200
Os.33042.1.S1_at--626--8431Chr01:28613822..28613846 (25 bp)
GGCCTTTCCAGTAGCACTATTCTGA
LOC_Os01g49200
Target Sequence 
GACATTGCCGGATTGCCTATCAAGAAGTTGTCTTTCAATGCCAGTACTCTACGTGAGACGGAGACACCTCGTAAACCTTT
TGCTCAGATCACACCAGGAAACAGTGTCTCGTCGACGCCTGTGCGCCCTATCACCAATAACACTGAGGATGATGAGAACA
GGACTCCGAAGACATTTACAGCACTGAATCCCAAGACTCCGATGACTGTTACGGCTCCAATGCAGATGGCAATGACTCCC
TCTCTGGCCAACAAGGTTTCAGCAACTCCAGTTTCCCTTGTTTACGACAAGCCAGAGGTAACATTGCAGGAGGACATCGA
CTACTCCTTTGAAGAAAGGCGGCTCGCCATCTATCTGGCCAGGCAAATGGTTTAACTGTTGATCAATTTATGTACGTAGT
TGAAATCTGACTGCATTTNNTTGTNCGGTGGCCATTGCGTATNGTTGGTCAACAATAGTCGGCCTTTCCAGTAGCACTAT
TCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis