Browse Element(s) Details


Os.10496.2.S1_x_at

Description gb:NM_192090.1
DB_XREF= gi:34911263
GEN=P0478H03.24
TID=Os.10496.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10496 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ATP synthase beta chain, mitochondrial precursor (P0478H03.24), mRNA.
PROD=putative ATP synthase beta chain, mitochondrialprecursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4919011/11ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g479802/11ATP synthase beta chain, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49180OsAffx.21494.1.S1_x_at11/111+28588263..28599915DNA ligase I, ATP-dependent family protein, expressed
LOC_Os01g49190Os.10496.2.S1_x_at11/111+28604547..28608863ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os01g49190Os.10496.1.S1_at10/111+28604547..28608863ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os01g49200Os.33042.1.S1_at11/111+28609661..28613939Microtubule associated protein containing protein, expressed
LOC_Os01g49210Os.29003.2.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_at11/111+28616229..28617119expressed protein
LOC_Os01g49230Os.36960.2.S1_x_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49230Os.36960.1.S1_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015986biological_processATP synthesis coupled proton transport
GO:0005739cellular_componentmitochondrion
GO:0005754cellular_componentproton-transporting ATP synthase, catalytic core (sensu Eukaryota)
GO:0009544cellular_componentchloroplast ATP synthase complex
GO:0015078molecular_functionhydrogen ion transporter activity
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10496.2.S1_x_at--769--2611Chr01:28607175..28607199 (25 bp)
AACCCTTGCTACTGATCTTGGAGGA
LOC_Os01g49190
Os.10496.2.S1_x_at--918--9031Chr01:28607201..28607225 (25 bp)
TGCAGGAGCGGATTACCACCACAAA
LOC_Os01g49190
Os.10496.2.S1_x_at--112--5331Chr01:28607226..28607250 (25 bp)
GAAGGGTTCTATCACATCTGTTCAA
LOC_Os01g49190
Os.10496.2.S1_x_at--361--10432Chr01:28607256..28607280 (25 bp)
TTATGTGCCTGCTGATGACTTGACA
LOC_Os01g49190
Os.10496.2.S1_x_at--874--6332Chr01:28607314..28607338 (25 bp)
GATGCTACTACTGTGTTGTCACGAC
LOC_Os01g49190
Os.10496.2.S1_x_at--696--4931Chr01:28607431..28607455 (25 bp)
GCTTGGTATTTATCCTGCTGTCGAT
LOC_Os01g49190
Os.10496.2.S1_x_at--663--1471Chr01:28607474..28607498 (25 bp)
AGAATGTTGTCTCCCCATGTACTGG
LOC_Os01g49190
Os.10496.2.S1_x_at--804--1231Chr01:28607610..28607634 (25 bp)
AGTTGACAGTCGCTCGTGCTAGGAA
LOC_Os01g49190
Os.10496.2.S1_x_at--181--5351Chr01:28607632..28607656 (25 bp)
GAAGATTCAGCGGTTCCTTAGCCAG
LOC_Os01g49190
Os.10496.2.S1_x_at--1046--5871Chr01:28607716..28608104 (25 bp)
GAGCGTTCAAAGTTTCCAGGGTGTA
LOC_Os01g49190
Os.10496.2.S1_x_at--274--691Chr01:28608430..28608454 (25 bp)
ATGACCTTCCTGAGCAGTCATTCTA
LOC_Os01g49190
Target Sequence 
AACCCTTGCTACTGATCTTGGAGGACTGCAGGAGCGGATTACCACCACAAAGAAGGGTTCTATCACATCTGTTCAAGCTA
TTTATGTGCCTGCTGATGACTTGACAGATCCTGCCCCTGCTACTACATTTGCCCATCTTGATGCTACTACTGTGTTGTCA
CGACAGATTTCTGAGCTTGGTATTTATCCTGCTGTCGATCCTTTGGATTCCACATCCAGAATGTTGTCTCCCCATGTACT
GGGTGAGGACCACTACAACACAGCTCGTGGTGTTCAGAAGGTTCTTCAGAATTACAAGAATCTTCAAGATATTATTGCCA
TTCTGGGAATGGACGAGCTCAGTGAGGATGATAAGTTGACAGTCGCTCGTGCTAGGAAGATTCAGCGGTTCCTTAGCCAG
CCCTTCCACGTTGCCGAAGTTTTCACGGGTGCACCTGGAAAGTATGTTGAGCTGAAGGAGAGCGTTCAAAGTTTCCAGGG
TGTATTGGACGGGAAGTATGATGACCTTCCTGAGCAGTCATTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10496.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis