Browse Element(s) Details


Os.29003.2.S1_x_at

Description gb:NM_192091.1
DB_XREF= gi:34911265
GEN=P0478H03.25
TID=Os.29003.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.29003 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) cytokinesis regulating protein - like (P0478H03.25), mRNA.
PROD=cytokinesis regulating protein - like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4921011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49180OsAffx.21494.1.S1_x_at11/111+28588263..28599915DNA ligase I, ATP-dependent family protein, expressed
LOC_Os01g49190Os.10496.2.S1_x_at11/111+28604547..28608863ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os01g49190Os.10496.1.S1_at10/111+28604547..28608863ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os01g49200Os.33042.1.S1_at11/111+28609661..28613939Microtubule associated protein containing protein, expressed
LOC_Os01g49210Os.29003.2.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_at11/111+28616229..28617119expressed protein
LOC_Os01g49230Os.36960.2.S1_x_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49230Os.36960.1.S1_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49240Os.30035.1.S1_at11/111+28634500..28636348UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g49250Os.37407.1.S1_at11/111+28638902..28644122SLL2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.29003.2.S1_x_at--867--6951Chr01:28616315..28616339 (25 bp)
GTAGCCGGCGAGCTCTACCTCGTTG
LOC_Os01g49210
Os.29003.2.S1_x_at--477--4611Chr01:28616322..28616346 (25 bp)
GCGAGCTCTACCTCGTTGGCATGGG
LOC_Os01g49210
Os.29003.2.S1_x_at--339--5431Chr01:28616347..28616371 (25 bp)
GAACCACCTGGCGTCGTGCACGATG
LOC_Os01g49210
Os.29003.2.S1_x_at--916--6971Chr01:28616569..28616593 (25 bp)
GTACGCCGCGTTCCCCATGAAGCGA
LOC_Os01g49210
Os.29003.2.S1_x_at--1155--6691Chr01:28616578..28616602 (25 bp)
GTTCCCCATGAAGCGACTGGGCGCG
LOC_Os01g49210
Os.29003.2.S1_x_at--661--8351Chr01:28616632..28616656 (25 bp)
GGCGGCCGCGGTGTCCAGGGATCAG
LOC_Os01g49210
Os.29003.2.S1_x_at--964--4231Chr01:28616796..28616820 (25 bp)
CCGAGGCGGAGATCAGCGAGCTCAA
LOC_Os01g49210
Os.29003.2.S1_x_at--1038--3951Chr01:28616802..28616826 (25 bp)
CGGAGATCAGCGAGCTCAAGCAGCG
LOC_Os01g49210
Os.29003.2.S1_x_at--1117--3731Chr01:28616816..28616840 (25 bp)
CTCAAGCAGCGGATCAGCGGCGGCC
LOC_Os01g49210
Os.29003.2.S1_x_at--500--891Chr01:28616849..28616873 (25 bp)
AGGCGGCCGACGTTGGAGACCATAC
LOC_Os01g49210
Os.29003.2.S1_x_at--843--4511Chr01:28616854..28616878 (25 bp)
GCCGACGTTGGAGACCATACACGAG
LOC_Os01g49210
Target Sequence
GTAGCCGGCGAGCTCTACCTCGTTGGCATGGGGAACCACCTGGCGTCGTGCACGATGGCGAGGGTGCCGGGGGCGGCGAG
GGGGGCGAAGGTGGTGCTGCCGGACGGCGCGGTGAGGGCGGTGAAGGTGCCGGCGAAGGCGGCGGAGCTGATGCTCGAGG
CGCCGGGCCACTTCCTCGCGGACGCGCGCGCGCTGCGGGCGGGGGGAAGGATCGCGGCGCTCGGCGCCGACGAGGACCTC
GAGCTCGGGGGCCTGTACGCCGCGTTCCCCATGAAGCGACTGGGCGCGCCCGCCGCGCCGGCGGACATGGCGCGCCTGGC
GGCCGCGGTGTCCAGGGATCAGGCCGCCGCGCGGAGGTCGTCCGCCACGGCCAAGGTGGCGGCCGTCGTGGTGGCGCCGC
AGCACGACGCCGCGATGGCCGAGGAGGAGGAAGACGCCGCGCGGCCGAGGCTGGACGAGATGGCCGTGGGCGACGCGGCG
GCCGAGGCGGAGATCAGCGAGCTCAAGCAGCGGATCAGCGGCGGCCGCCGGTCGAGGCGGCCGACGTTGGAGACCATACA
CGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29003.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis