Browse Element(s) Details


Os.30035.1.S1_at

Description gb:AK109457.1
DB_XREF= gi:32994666
TID=Os.30035.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30035 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) limonoid UDP-glucosyltransferase-like protein (P0478H03.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C10, full insert sequence.
FL= gb:AK109457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4924011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49200Os.33042.1.S1_at11/111+28609661..28613939Microtubule associated protein containing protein, expressed
LOC_Os01g49210Os.29003.2.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_at11/111+28616229..28617119expressed protein
LOC_Os01g49230Os.36960.2.S1_x_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49230Os.36960.1.S1_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49240Os.30035.1.S1_at11/111+28634500..28636348UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g49250Os.37407.1.S1_at11/111+28638902..28644122SLL2, putative, expressed
LOC_Os01g49260Os.31524.2.S1_at11/111+28646062..28647909expressed protein
LOC_Os01g49260Os.31524.1.S1_at10/111+28646062..28647909expressed protein
LOC_Os01g49270OsAffx.23724.1.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49270OsAffx.23724.2.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49280Os.23770.1.A1_s_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280OsAffx.2280.1.S1_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280Os.41685.1.S1_x_at10/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49290Os.4684.1.S1_at11/111+28657648..28660165Guanine nucleotide-binding protein beta subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
GO:0047215molecular_functionindole-3-acetate beta-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30035.1.S1_at--226--7271Chr01:28635951..28635975 (25 bp)
GTCCAGGCGTTCGTTGACCGGATAA
LOC_Os01g49240
Os.30035.1.S1_at--692--4571Chr01:28636034..28636058 (25 bp)
GCGCGTAGTAGTTTGCATGGGTCAC
LOC_Os01g49240
Os.30035.1.S1_at--932--4991Chr01:28636048..28636072 (25 bp)
GCATGGGTCACCTTGAAGCTTGAAT
LOC_Os01g49240
Os.30035.1.S1_at--512--5211Chr01:28636069..28636093 (25 bp)
GAATTCCTTCCTGGATAGGCATGTG
LOC_Os01g49240
Os.30035.1.S1_at--910--7611Chr01:28636116..28636140 (25 bp)
GGGTCACTTGACCTCCCGAATAAAG
LOC_Os01g49240
Os.30035.1.S1_at--422--6351Chr01:28636186..28636210 (25 bp)
GATGCTGTCGGCCTGTTGCTACTTG
LOC_Os01g49240
Os.30035.1.S1_at--918--10711Chr01:28636201..28636225 (25 bp)
TTGCTACTTGCACGGTCATCTTCTA
LOC_Os01g49240
Os.30035.1.S1_at--68--6551Chr01:28636231..28636255 (25 bp)
GATTTTCCAGCCTTGCAGGAACAGG
LOC_Os01g49240
Os.30035.1.S1_at--936--8151Chr01:28636254..28636278 (25 bp)
GGAAACCAGAGGTTCGTGGCCATCT
LOC_Os01g49240
Os.30035.1.S1_at--237--7551Chr01:28636269..28636293 (25 bp)
GTGGCCATCTGACTGCTGAGTGCAT
LOC_Os01g49240
Os.30035.1.S1_at--618--6111Chr01:28636286..28636310 (25 bp)
GAGTGCATGTGCTTATTACCTGTGT
LOC_Os01g49240
Target Sequence 
GTCCAGGCGTTCGTTGACCGGATAACGTCCGGAGGCGCGGAGCCGTGACTTGCCCGATCGGATCACGTCGCGTTGGCGGT
TTGGCGCGTAGTAGTTTGCATGGGTCACCTTGAAGCTTGAATTCCTTCCTGGATAGGCATGTGAGGATCTGTTTGCATGT
TCAATGGGTCACTTGACCTCCCGAATAAAGTTTAGCAAAACTAGATATAGTTTAACAGACATTGCATGTGCAGTGGATGC
TGTCGGCCTGTTGCTACTTGCACGGTCATCTTCTACCCCTGATTTTCCAGCCTTGCAGGAACAGGAAACCAGAGGTTCGT
GGCCATCTGACTGCTGAGTGCATGTGCTTATTACCTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis