Browse Element(s) Details


OsAffx.23724.2.S1_x_at

Description tigr:9629.m04756
TID=OsAffx.23724.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4927011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49230Os.36960.2.S1_x_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49230Os.36960.1.S1_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49240Os.30035.1.S1_at11/111+28634500..28636348UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g49250Os.37407.1.S1_at11/111+28638902..28644122SLL2, putative, expressed
LOC_Os01g49260Os.31524.2.S1_at11/111+28646062..28647909expressed protein
LOC_Os01g49260Os.31524.1.S1_at10/111+28646062..28647909expressed protein
LOC_Os01g49270OsAffx.23724.1.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49270OsAffx.23724.2.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49280Os.23770.1.A1_s_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280OsAffx.2280.1.S1_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280Os.41685.1.S1_x_at10/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49290Os.4684.1.S1_at11/111+28657648..28660165Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os01g49300NANA1+28665123..28669321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g49310Os.14151.1.S1_at10/111+28672690..28677882expressed protein
LOC_Os01g49310Os.41682.1.S1_x_at10/111+28672690..28677882expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23724.2.S1_x_at--1045--5751Chr01:28651157..28651181 (25 bp)
GACGGGCGCCAATCTGTTCGGCCAC
LOC_Os01g49270
OsAffx.23724.2.S1_x_at--221--491Chr01:28651197..28651221 (25 bp)
ATCTGGGACACCTACCTCGAGAGGT
LOC_Os01g49270
OsAffx.23724.2.S1_x_at--41--1511Chr01:28651206..28651230 (25 bp)
ACCTACCTCGAGAGGTTCGTGGCGA
LOC_Os01g49270
OsAffx.23724.2.S1_x_at--652--4571Chr01:28651257..28651281 (25 bp)
GCGCGGGAACTCTTCGCTGAGGCCA
LOC_Os01g49270
OsAffx.23724.2.S1_x_at--147--7811Chr01:28651479..28651503 (25 bp)
GGTCTACGAGCAGGCGATCGAGTCC
LOC_Os01g49270
OsAffx.23724.2.S1_x_at--900--4231Chr01:28651592..28651616 (25 bp)
CCGTGTTCGTGCACGCGTCGGGCTA
LOC_Os01g49270
OsAffx.23724.2.S1_x_at--419--8391Chr01:28651678..28651702 (25 bp)
GGCGACGAGCGCACCTTCACAGACA
LOC_Os01g49270
OsAffx.23724.2.S1_x_at--905--1731Chr01:28651690..28651714 (25 bp)
ACCTTCACAGACATGCTCCGGATAA
LOC_Os01g49270
OsAffx.23724.2.S1_x_at--265--631Chr01:28651702..28651726 (25 bp)
ATGCTCCGGATAAGGCGCACGCAGA
LOC_Os01g49270
OsAffx.23724.2.S1_x_at--1096--891Chr01:28651714..28651738 (25 bp)
AGGCGCACGCAGAAGCACGCGAAGA
LOC_Os01g49270
OsAffx.23724.2.S1_x_at--912--5371Chr01:28651779..28651803 (25 bp)
GAAGAAGAGATGTGCTGATCAGCTT
LOC_Os01g49270
Target Sequence 
GACGGGCGCCAATCTGTTCGGCCACCCGCACAGCAAGCCCATCTGGGACACCTACCTCGAGAGGTTCGTGGCGAGGCACG
GCGGGAGCAAGGCCGAGCGCGCGCGGGAACTCTTCGCTGAGGCCACCCGCCGCGCTCCTCCCCACGACAGGGCGCGCCTC
TTCCTGCGCCACGCCCGGGCGAGCGTCTACGAGGCCTACGCGGGGCGGGCGGCCGAGCTCCGCGGCGTGCCGAAGGTGAG
GCGGGTCTACGAGCAGGCGATCGAGTCCGGCGGCCTCCCTCGCCGCGACGCCCTGGCGCTGTGCCTCCGCCTCGCCGCGC
TCGAGGAAGCGCTGGGAGAGGCCGCCCGCGCTCGCGCCGTGTTCGTGCACGCGTCGGGCTACGGCGATCCCGACGCCGAC
GAGGAGTTCTGGGCGAAGTGGAGCGGCTTCGAAGTCCGGCACGGCGACGAGCGCACCTTCACAGACATGCTCCGGATAAG
GCGCACGCAGAAGCACGCGAAGACGCCTGGGGTTCAGGTGAATGGCGAACTGAAAGATGAGAAGAAGAAGAGATGTGCTG
ATCAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23724.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis