Browse Element(s) Details


Os.41682.1.S1_x_at

Description gb:CB630023
DB_XREF= gi:29625012
DB_XREF=OSIIEb06L13.f
CLONE=OSIIEb06L13
TID=Os.41682.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519D04.13 (P0519D04.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4931010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49260Os.31524.2.S1_at11/111+28646062..28647909expressed protein
LOC_Os01g49260Os.31524.1.S1_at10/111+28646062..28647909expressed protein
LOC_Os01g49270OsAffx.23724.1.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49270OsAffx.23724.2.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49280Os.23770.1.A1_s_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280OsAffx.2280.1.S1_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280Os.41685.1.S1_x_at10/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49290Os.4684.1.S1_at11/111+28657648..28660165Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os01g49300NANA1+28665123..28669321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g49310Os.14151.1.S1_at10/111+28672690..28677882expressed protein
LOC_Os01g49310Os.41682.1.S1_x_at10/111+28672690..28677882expressed protein
LOC_Os01g49320Os.17479.1.S1_at11/111+28681672..28682915Acidic endochitinase precursor, putative, expressed
LOC_Os01g49330Os.35041.2.S1_x_at11/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49330Os.35041.1.S1_at10/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49340Os.32007.1.S1_x_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.54637.1.S1_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.32007.1.S1_at10/111+28694783..28697378expressed protein
LOC_Os01g49350Os.33804.2.S1_x_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.33804.1.S1_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.25168.2.A1_at3/111+28697767..28701355expressed protein
LOC_Os01g49350OsAffx.6448.1.S1_at1/111+28697767..28701355expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41682.1.S1_x_at--437--8071Chr01:28674638..28674662 (25 bp)
GGAGAATCATCTTACCACAAGCACT
LOC_Os01g49310
Os.41682.1.S1_x_at--781--2711Chr01:28674656..28674680 (25 bp)
AAGCACTCCCTATGGATGGCACATT
LOC_Os01g49310
Os.41682.1.S1_x_at--1002--7551Chr01:28674681..28674705 (25 bp)
GGGCCAGATCAAGCATCAGTCCAGA
LOC_Os01g49310
Os.41682.1.S1_x_at--935--2291Chr01:28674712..28674736 (25 bp)
AAATGGCCAGAGCTGTAGCCCACTT
LOC_Os01g49310
Os.41682.1.S1_x_at--464--7591Chr01:28674774..28674798 (25 bp)
GGGCTTTACCTTTTGAGCTCATGAA
LOC_Os01g49310
Os.41682.1.S1_x_at--1067--1031Chr01:28674841..28674865 (25 bp)
AGGTGTCTCTGCAGGAAATACTCGG
LOC_Os01g49310
Os.41682.1.S1_x_at--103--6451Chr01:28674932..28674956 (25 bp)
GATCAGATGGGTAGCTCCTTTGAAA
LOC_Os01g49310
Os.41682.1.S1_x_at--72--10191Chr01:28674984..28675008 (25 bp)
TATATGCTGCTAAGACGGTGGTATC
LOC_Os01g49310
Os.41682.1.S1_x_at--810--8571Chr01:28675047..28675071 (25 bp)
TGGATTCTCGTAAACTTTGTGGCAC
LOC_Os01g49310
Os.41682.1.S1_x_at--1062--3031NONE
AATCGACAGTATTCTTAACCCCAGG
NONE
Os.41682.1.S1_x_at--673--7171Chr01:28675153..28675177 (25 bp)
GTCTGCGTTGGTCACATCATCTGAA
LOC_Os01g49310
Target Sequence 
GGAGAATCATCTTACCACAAGCACTCCCTATGGATGGCACATTGGGCCAGATCAAGCATCAGTCCAGAACCTCAAAATGG
CCAGAGCTGTAGCCCACTTAAGGAAATTGATGATGTTGGCTATTCAAAAGATTGCGGGGCTTTACCTTTTGAGCTCATGA
AAGCTAGAGTAGCTGAAAGGTTGATGGTGGGAGTGAGCCATGGAGGTGTCTCTGCAGGAAATACTCGGCAATTCAGTACT
AATATGAGGGGTGTAGCACGTGATGTTTGCCAAGAAGTTCAATGCAAGAATGTTGATCAGATGGGTAGCTCCTTTGAAAG
TTCTGTGATGCAGAAAAATGTGAACTTATATGCTGCTAAGACGGTGGTATCTGAAAGATATTCTGTTCATAAGATATCTG
ATATATTGGTGGATTCTCGTAAACTTTGTGGCACTGAAAATCTGAGTTCAGAGTGGAATCACTTTCCAATGTTTGAAATC
AACAGGAAAATCGACAGTATTCTTAACCCCAGGCGGTCTGCGTTGGTCACATCATCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41682.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis