Browse Element(s) Details


Os.25168.2.A1_at

Description gb:CA759316
DB_XREF= gi:25803355
DB_XREF=BR060003B20G02.ab1
CLONE=BR060003B20G02.ab1
TID=Os.25168.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.25168 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T45590 (A.thaliana) T45590 hypothetical protein F12A12.50 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g493503/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49310Os.14151.1.S1_at10/111+28672690..28677882expressed protein
LOC_Os01g49310Os.41682.1.S1_x_at10/111+28672690..28677882expressed protein
LOC_Os01g49320Os.17479.1.S1_at11/111+28681672..28682915Acidic endochitinase precursor, putative, expressed
LOC_Os01g49330Os.35041.2.S1_x_at11/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49330Os.35041.1.S1_at10/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49340Os.32007.1.S1_x_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.54637.1.S1_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.32007.1.S1_at10/111+28694783..28697378expressed protein
LOC_Os01g49350Os.33804.2.S1_x_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.33804.1.S1_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.25168.2.A1_at3/111+28697767..28701355expressed protein
LOC_Os01g49350OsAffx.6448.1.S1_at1/111+28697767..28701355expressed protein
LOC_Os01g49360OsAffx.11528.1.S1_at11/111+28703433..28706534FAD-binding domain-containing protein, putative, expressed
LOC_Os01g49370OsAffx.24369.13.S1_s_at11/111+28707937..28710487expressed protein
LOC_Os01g49380Os.50385.1.S1_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.50385.1.S1_s_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.45956.1.S1_x_at9/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.7467.1.S1_at1/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25168.2.A1_at--220--10171NONE
TATAAGACGTGCGTACATGCATGGT
NONE
Os.25168.2.A1_at--905--1391NONE
AGACGTGCGTACATGCATGGTAATT
NONE
Os.25168.2.A1_at--50--7311NONE
GTGCGTACATGCATGGTAATTAATT
NONE
Os.25168.2.A1_at--262--3151Chr12:8866739..8866969 (25 bp)
AATTAATTAGCATTTCTTCTCTCCT
NONE
Os.25168.2.A1_at--975--3131NONE
AATTAGCATTTCTTCTCTCCTAAAT
NONE
Os.25168.2.A1_at--729--4935Chr08:8318809..8318828 (20 bp)
GCATTTCTTCTCTCCTAAATTATTA
NONE
Os.25168.2.A1_at--779--176Chr12:26152174..26152194 (21 bp)
ATTTTTTAAATCATACACTCACGAG
NONE
Os.25168.2.A1_at--466--9812Chr04:32405994..32406018 (25 bp)
TACACTCACGAGATGTTTAATTCTA
NONE
Os.25168.2.A1_at--335--68320Chr09:19836030..19836054 (25 bp)
GTTTAATTCTATTGGGTGCATGTAT
NONE
Os.25168.2.A1_at--611--31520Chr09:19836034..19836058 (25 bp)
AATTCTATTGGGTGCATGTATTGTA
NONE
Os.25168.2.A1_at--626--7778Chr08:23823649..23823670 (22 bp)
GGTGCATGTATTGTATTAGTTGGAT
NONE
Target Sequence 
TATAAGACGTGCGTACATGCATGGTAATTAATTAGCATTTCTTCTCTCCTAAATTATTATTTTTTAAATCATACACTCAC
GAGATGTTTAATTCTATTGGGTGCATGTATTGTATTAGTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25168.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis