Browse Element(s) Details


Os.32007.1.S1_at

Description gb:NM_192106.1
DB_XREF= gi:34911295
GEN=P0519D04.17
TID=Os.32007.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519D04.17 (P0519D04.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0519D04.17 (P0519D04.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4934010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49310Os.14151.1.S1_at10/111+28672690..28677882expressed protein
LOC_Os01g49310Os.41682.1.S1_x_at10/111+28672690..28677882expressed protein
LOC_Os01g49320Os.17479.1.S1_at11/111+28681672..28682915Acidic endochitinase precursor, putative, expressed
LOC_Os01g49330Os.35041.2.S1_x_at11/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49330Os.35041.1.S1_at10/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49340Os.32007.1.S1_x_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.54637.1.S1_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.32007.1.S1_at10/111+28694783..28697378expressed protein
LOC_Os01g49350Os.33804.2.S1_x_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.33804.1.S1_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.25168.2.A1_at3/111+28697767..28701355expressed protein
LOC_Os01g49350OsAffx.6448.1.S1_at1/111+28697767..28701355expressed protein
LOC_Os01g49360OsAffx.11528.1.S1_at11/111+28703433..28706534FAD-binding domain-containing protein, putative, expressed
LOC_Os01g49370OsAffx.24369.13.S1_s_at11/111+28707937..28710487expressed protein
LOC_Os01g49380Os.50385.1.S1_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.50385.1.S1_s_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.45956.1.S1_x_at9/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.7467.1.S1_at1/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32007.1.S1_at--629--8491NONE
TGGCAGGGAGGGTGCTTCAAAAGAT
NONE
Os.32007.1.S1_at--1161--7351Chr01:28695214..28695281 (25 bp)
GTGATAAAGTAATCTCAACTACTGA
LOC_Os01g49340
Os.32007.1.S1_at--619--7071Chr01:28695206..28695273 (25 bp)
GTAATCTCAACTACTGATGAAACCA
LOC_Os01g49340
Os.32007.1.S1_at--372--451Chr01:28695203..28695270 (25 bp)
ATCTCAACTACTGATGAAACCAATT
LOC_Os01g49340
Os.32007.1.S1_at--238--9711Chr01:28695200..28695220 (21 bp)
TCAACTACTGATGAAACCAATTTCT
LOC_Os01g49340
Os.32007.1.S1_at--773--3711Chr01:28695196..28695220 (25 bp)
CTACTGATGAAACCAATTTCTTAGG
LOC_Os01g49340
Os.32007.1.S1_at--590--6311Chr01:28695191..28695215 (25 bp)
GATGAAACCAATTTCTTAGGTTCTG
LOC_Os01g49340
Os.32007.1.S1_at--938--5531Chr01:28695188..28695212 (25 bp)
GAAACCAATTTCTTAGGTTCTGGCA
LOC_Os01g49340
Os.32007.1.S1_at--325--1611Chr01:28695185..28695209 (25 bp)
ACCAATTTCTTAGGTTCTGGCAACG
LOC_Os01g49340
Os.32007.1.S1_at--967--3171Chr01:28695183..28695207 (25 bp)
CAATTTCTTAGGTTCTGGCAACGCA
LOC_Os01g49340
Os.32007.1.S1_at--1154--3111Chr01:28695182..28695206 (25 bp)
AATTTCTTAGGTTCTGGCAACGCAA
LOC_Os01g49340
Target Sequence 
TGGCAGGGAGGGTGCTTCAAAAGATTCCACCCTTGGAAATGCCACTGTGGGGTGGGAAAGATTTGAATTCAATAAGGATG
CTCCACTTGATGAAGATGACAATGATGTTGAAGTTGCTAATGATGACGCTTCACTGGTGAAGCACATAGGAAAGAGCTTC
CGACTTTCTGCTGTACAATCCAAGCATGAAGATACGGTCAGAGATGCACATGAAAATGCTATATTTGGAGTACCTGCATA
CCCCATTGTTGATACTGAAACTACGGAGGCTGAGCCTGAAACCAATGACGAAAGCGAGAAAGCTAAAGATGTTGAAGCCG
AACCTAGCAGTTCCCTCATTAGTGATAAAGTAATCTCAACTACTGATGAAACCAATTTCTTAGGTTCTGGCAACGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis