Browse Element(s) Details


Os.33804.1.S1_at

Description gb:AK073996.1
DB_XREF= gi:32984019
TID=Os.33804.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519D04.18 (P0519D04.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071E20, full insert sequence.
FL= gb:AK061158.1 gb:AK073996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4935011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49310Os.14151.1.S1_at10/111+28672690..28677882expressed protein
LOC_Os01g49310Os.41682.1.S1_x_at10/111+28672690..28677882expressed protein
LOC_Os01g49320Os.17479.1.S1_at11/111+28681672..28682915Acidic endochitinase precursor, putative, expressed
LOC_Os01g49330Os.35041.2.S1_x_at11/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49330Os.35041.1.S1_at10/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49340Os.32007.1.S1_x_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.54637.1.S1_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.32007.1.S1_at10/111+28694783..28697378expressed protein
LOC_Os01g49350Os.33804.2.S1_x_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.33804.1.S1_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.25168.2.A1_at3/111+28697767..28701355expressed protein
LOC_Os01g49350OsAffx.6448.1.S1_at1/111+28697767..28701355expressed protein
LOC_Os01g49360OsAffx.11528.1.S1_at11/111+28703433..28706534FAD-binding domain-containing protein, putative, expressed
LOC_Os01g49370OsAffx.24369.13.S1_s_at11/111+28707937..28710487expressed protein
LOC_Os01g49380Os.50385.1.S1_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.50385.1.S1_s_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.45956.1.S1_x_at9/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.7467.1.S1_at1/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33804.1.S1_at--496--2251Chr01:28697955..28697979 (25 bp)
AAATTACAAGCTAGTGACGCACTGA
LOC_Os01g49350
Os.33804.1.S1_at--679--10072Chr03:31067627..31067646 (20 bp)
TAGTGACGCACTGACGCCTGCTGTT
NONE
Os.33804.1.S1_at--1038--1811Chr01:28697931..28697955 (25 bp)
ACGCCTGCTGTTGTGGCGAACCAAG
LOC_Os01g49350
Os.33804.1.S1_at--1147--3851Chr01:28697924..28697948 (25 bp)
CTGTTGTGGCGAACCAAGGCAAGTT
LOC_Os01g49350
Os.33804.1.S1_at--407--2891Chr01:28697909..28697933 (25 bp)
AAGGCAAGTTGCGTGGTTTGAGATT
LOC_Os01g49350
Os.33804.1.S1_at--468--6831Chr01:28697894..28697918 (25 bp)
GTTTGAGATTGTGGCAACTCGGGTT
LOC_Os01g49350
Os.33804.1.S1_at--678--5151Chr01:28697881..28697905 (25 bp)
GCAACTCGGGTTTATTACTGACTAT
LOC_Os01g49350
Os.33804.1.S1_at--745--9911Chr01:28697866..28697890 (25 bp)
TACTGACTATACACATGCTTAATTT
LOC_Os01g49350
Os.33804.1.S1_at--261--151Chr01:28697804..28697828 (25 bp)
ATTACTGTATACCACTCTCTTGGCA
LOC_Os01g49350
Os.33804.1.S1_at--513--4371Chr01:28697793..28697817 (25 bp)
CCACTCTCTTGGCATTTCAACTGAG
LOC_Os01g49350
Os.33804.1.S1_at--65--2571Chr01:28697779..28697799 (21 bp)
AACTGAGTTAGTGTGGCTTTTTGCC
LOC_Os01g49350
Target Sequence 
AAATTACAAGCTAGTGACGCACTGACGCCTGCTGTTGTGGCGAACCAAGGCAAGTTGCGTGGTTTGAGATTGTGGCAACT
CGGGTTTATTACTGACTATACACATGCTTAATTTGAATGACAAAGTGTGGCTTAAACAAANNNGAAAGTGTATTACTGTA
TACCACTCTCTTGGCATTTCAACTGAGTTAGTGTGGCTTTTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis