Browse Element(s) Details


Os.14151.1.S1_at

Description gb:AK122113.1
DB_XREF= gi:37991759
TID=Os.14151.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519D04.14 (P0519D04.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127O15, full insert sequence.
FL= gb:AK064954.1 gb:AK122113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4931010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49260Os.31524.2.S1_at11/111+28646062..28647909expressed protein
LOC_Os01g49260Os.31524.1.S1_at10/111+28646062..28647909expressed protein
LOC_Os01g49270OsAffx.23724.1.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49270OsAffx.23724.2.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49280Os.23770.1.A1_s_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280OsAffx.2280.1.S1_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280Os.41685.1.S1_x_at10/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49290Os.4684.1.S1_at11/111+28657648..28660165Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os01g49300NANA1+28665123..28669321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g49310Os.14151.1.S1_at10/111+28672690..28677882expressed protein
LOC_Os01g49310Os.41682.1.S1_x_at10/111+28672690..28677882expressed protein
LOC_Os01g49320Os.17479.1.S1_at11/111+28681672..28682915Acidic endochitinase precursor, putative, expressed
LOC_Os01g49330Os.35041.2.S1_x_at11/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49330Os.35041.1.S1_at10/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49340Os.32007.1.S1_x_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.54637.1.S1_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.32007.1.S1_at10/111+28694783..28697378expressed protein
LOC_Os01g49350Os.33804.2.S1_x_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.33804.1.S1_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.25168.2.A1_at3/111+28697767..28701355expressed protein
LOC_Os01g49350OsAffx.6448.1.S1_at1/111+28697767..28701355expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14151.1.S1_at--596--5311Chr01:28677470..28677494 (25 bp)
GAAGGTCAGTTTCCAAGCATCGCAG
LOC_Os01g49310
Os.14151.1.S1_at--947--7431Chr01:28677513..28677537 (25 bp)
GTGTAATGAACAAGCTCCGGCCATG
LOC_Os01g49310
Os.14151.1.S1_at--562--4791Chr01:28677526..28677550 (25 bp)
GCTCCGGCCATGTGAACTTCAGAAG
LOC_Os01g49310
Os.14151.1.S1_at--276--7711Chr01:28677553..28677577 (25 bp)
GGGTCCCTCTGTAGTCTGGAGGACA
LOC_Os01g49310
Os.14151.1.S1_at--787--9051Chr01:28677594..28677618 (25 bp)
TGCATGGTGCATGTTTTGCCGGCCA
LOC_Os01g49310
Os.14151.1.S1_at--176--9191Chr01:28677610..28677634 (25 bp)
TGCCGGCCATCAGCTATCATGTAAA
LOC_Os01g49310
Os.14151.1.S1_at--107--2331Chr01:28677635..28677659 (25 bp)
AAAGTCTTCAAATTCTGCAGGTAGG
LOC_Os01g49310
Os.14151.1.S1_at--351--6751Chr01:28677755..28677779 (25 bp)
GTTAAGTGATTCTCTTTTGCCCTAT
LOC_Os01g49310
Os.14151.1.S1_at--664--10131Chr01:28677777..28677801 (25 bp)
TATCCTAACTCCTGAAGCCCTGAAG
LOC_Os01g49310
Os.14151.1.S1_at--340--9351Chr01:28677845..28677869 (25 bp)
TCGCACATGAATTTGCTTCTGTTGC
LOC_Os01g49310
Os.14151.1.S1_at--455--8811NONE
TGTTGCTTCATAATCCCTGGGTTTT
NONE
Target Sequence 
GAAGGTCAGTTTCCAAGCATCGCAGCAATGGCGATGATGGGGCGTGTAATGAACAAGCTCCGGCCATGTGAACTTCAGAA
GAGGGGTCCCTCTGTAGTCTGGAGGACAGAGGGGCTGTGAAAATTGCATGGTGCATGTTTTGCCGGCCATCAGCTATCAT
GTAAAAAAGTCTTCAAATTCTGCAGGTAGGGGATACTTTAGTAAACGCAACGTGTGATTATNATTTTTCAAAAGAGAAAG
TATGCGTGGTTTTTTTTATCAATCATACCATGATGATTGGTCAATTGTTAAGTGATTCTCTTTTGCCCTATCCTAACTCC
TGAAGCCCTGAAGGGGCACCCTATTTTTTGTATCCNAAATAATTCGATGAACTGGCNTCGCACATGAATTTGCTTCTGTT
GCTTCATAATCCCTGGGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis