Browse Element(s) Details


OsAffx.2280.1.S1_at

Description tigr:9629.m04757
TID=OsAffx.2280.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4928011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49230Os.36960.2.S1_x_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49230Os.36960.1.S1_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49240Os.30035.1.S1_at11/111+28634500..28636348UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g49250Os.37407.1.S1_at11/111+28638902..28644122SLL2, putative, expressed
LOC_Os01g49260Os.31524.2.S1_at11/111+28646062..28647909expressed protein
LOC_Os01g49260Os.31524.1.S1_at10/111+28646062..28647909expressed protein
LOC_Os01g49270OsAffx.23724.1.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49270OsAffx.23724.2.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49280Os.23770.1.A1_s_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280OsAffx.2280.1.S1_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280Os.41685.1.S1_x_at10/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49290Os.4684.1.S1_at11/111+28657648..28660165Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os01g49300NANA1+28665123..28669321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g49310Os.14151.1.S1_at10/111+28672690..28677882expressed protein
LOC_Os01g49310Os.41682.1.S1_x_at10/111+28672690..28677882expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2280.1.S1_at--496--1411Chr01:28653098..28653122 (25 bp)
AGAATTCCAGCCCAAAAGGTGTCTT
LOC_Os01g49280
OsAffx.2280.1.S1_at--791--2311Chr01:28653084..28653108 (25 bp)
AAAGGTGTCTTCTATTGCCGTGTAG
LOC_Os01g49280
OsAffx.2280.1.S1_at--368--4491Chr01:28653073..28653092 (20 bp)
GCCGTGTAGTCGCAATATCTCTGAT
LOC_Os01g49280
OsAffx.2280.1.S1_at--567--3111Chr01:28652956..28653079 (25 bp)
AATATCTCTGATGGCCTTGTTGGTG
LOC_Os01g49280
OsAffx.2280.1.S1_at--1068--3611Chr01:28652941..28652965 (25 bp)
CTTGTTGGTGCTCCGTGATGCGATC
LOC_Os01g49280
OsAffx.2280.1.S1_at--775--7391Chr01:28652927..28652951 (25 bp)
GTGATGCGATCTCACTTATCCTCGG
LOC_Os01g49280
OsAffx.2280.1.S1_at--462--10431Chr01:28652912..28652936 (25 bp)
TTATCCTCGGCGATCCTGAGGTCTA
LOC_Os01g49280
OsAffx.2280.1.S1_at--538--8891Chr01:28652896..28652920 (25 bp)
TGAGGTCTACTCGATAGCACTGTTC
LOC_Os01g49280
OsAffx.2280.1.S1_at--795--6491Chr01:28652792..28652908 (25 bp)
GATAGCACTGTTCACTCTTTTGATG
LOC_Os01g49280
OsAffx.2280.1.S1_at--77--3491Chr01:28652568..28652592 (25 bp)
CAGGCAGTGCACGAGGCAACGGATT
LOC_Os01g49280
OsAffx.2280.1.S1_at--200--9211Chr01:28652510..28652534 (25 bp)
TGCCACCTCCACAGCATGTTATCAG
LOC_Os01g49280
Target Sequence 
AGAATTCCAGCCCAAAAGGTGTCTTCTATTGCCGTGTAGTCGCAATATCTCTGATGGCCTTGTTGGTGCTCCGTGATGCG
ATCTCACTTATCCTCGGCGATCCTGAGGTCTACTCGATAGCACTGTTCACTCTTTTGATGATTAGAACAGCTGGAATTGT
CATACCAATATACATCATCTTGGTATCAGTTACCACATTGCTTCATCGATACAGGCAACATCAGGCAGTGCACGAGGCAA
CGGATTCAGAACCTGGAGGAGGAGAGGGCTTGCGGCCGATGCCACCTCCACAGCATGTTATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis